RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 ANKS3Q6ZW76 656 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 PID1Q7Z2X4 250 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 PRPF39Q86UA1 669 aaKnown RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 TRABD2AQ86V40 505 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ANKRD42Q8N9B4 389 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 SPPL2BQ8TCT7 592 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 SREK1Q8WXA9 508 aaKnown RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 CENPTQ96BT3 561 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 SIGLEC10Q96LC7 697 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 SERPINB11Q96P15 392 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 CCT8L2Q96SF2 557 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 PRMT1Q99873 361 aaKnown RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 DHRS4Q9BTZ2 278 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 FRMD8Q9BZ67 464 aaPredicted RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 CHRDQ9H2X0 955 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 NDFIP2Q9NV92 336 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 KLHL8Q9P2G9 620 aaPredicted RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 PSMC3IPQ9P2W1 217 aaPredicted RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ZC3H7BQ9UGR2 993 aaKnown RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 SLC24A2Q9UI40 661 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 TTLL3Q9Y4R7 772 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 RAD54BQ9Y620 910 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 LTBP2Q14767 1821 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 A0A1W2PPM1 405 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 FAM92AA1XBS5 289 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 WDR27A2RRH5 827 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 GMNCA6NCL1 334 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 SPAG7O75391 227 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 EFEMP2O95967 443 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ATP2A2P16615 1042 aaKnown RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 KRT15P19012 456 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 IFNAR2P48551 515 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ZNF135P52742 658 aaPredicted RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 CORO7P57737 925 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 PARP6Q2NL67 630 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 KLHL38Q2WGJ6 581 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 KBTBD12Q3ZCT8 623 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 PIK3R6Q5UE93 754 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 MANEALQ5VSG8 457 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 MSANTD2Q6P1R3 559 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ARHGAP12Q8IWW6 846 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 PGBD3Q8N328 593 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ZNF473Q8WTR7 871 aaKnown RBP9.44□□□□□ -0.9
ATG4A-202ENST00000345734 DCAKDQ8WVC6 231 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 HDAC11Q96DB2 347 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 SLC39A13Q96H72 371 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 IGSF21Q96ID5 467 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 AGAP3Q96P47 875 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 GORASP1Q9BQQ3 440 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 ETAA1Q9NY74 926 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 BPTFQ12830 3046 aa9.44□□□□□ -0.9
ATG4A-202ENST00000345734 E9PAM4 449 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 DFFAO00273 331 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 NCAM2O15394 837 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 RTN3O95197 1032 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 C1QAP02745 245 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 CLTBP09497 229 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 ATF6P18850 670 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 MX2P20592 715 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 HOXC13P31276 330 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 CD68P34810 354 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 OR1D2P34982 312 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 SERPINB6P35237 376 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 MSH2P43246 934 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 TUBP50607 506 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 TBX4P57082 545 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 CRADDP78560 199 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 DEFB103AP81534 67 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 PSMD5Q16401 504 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 LRRC26Q2I0M4 334 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 USP41Q3LFD5 358 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 UNC5AQ6ZN44 842 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 MIB1Q86YT6 1006 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 C4orf33Q8N1A6 199 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 ARHGAP18Q8N392 663 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 TBC1D31Q96DN5 1066 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 PAWRQ96IZ0 340 aaKnown RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 SPATA17Q96L03 361 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 CYTH2Q99418 400 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 FERMT1Q9BQL6 677 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 TRABDQ9H4I3 376 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 XAB2Q9HCS7 855 aaKnown RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 MPP6Q9NZW5 540 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 IGSF9Q9P2J2 1179 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 FETUBQ9UGM5 382 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 TLR6Q9Y2C9 796 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 MAD1L1Q9Y6D9 718 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 SRRM3A6NNA2 597 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 SLC38A8A6NNN8 435 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 CXorf49A8MYA2 514 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 FAM155BO75949 473 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 FAM107AO95990 144 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 JCHAINP01591 159 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 HMBSP08397 361 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 TARSP26639 723 aaKnown RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 SESN2P58004 480 aaPredicted RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 C10orf120Q5SQS8 335 aa9.43□□□□□ -0.9
ATG4A-202ENST00000345734 SPOUT1Q5T280 376 aaKnown RBP9.43□□□□□ -0.9
ATG4A-202ENST00000345734 AP1ARQ63HQ0 302 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms