RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SPECC1L-ADORA2AF8WAN1 911 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 GRK2P25098 689 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 GCKP35557 465 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 GRM3Q14832 879 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 CAPRIN2Q6IMN6 1127 aaKnown RBP19.69■□□□□ 0.74
COL9A3-201ENST00000343916 SCD5Q86SK9 330 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 SCN4BQ8IWT1 228 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 THEM5Q8N1Q8 247 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 POU5F2Q8N7G0 328 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 NAF1Q96HR8 494 aaKnown RBP19.69■□□□□ 0.74
COL9A3-201ENST00000343916 ATXN3LQ9H3M9 355 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 ABCC13Q9NSE7 274 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 DSEQ9UL01 958 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 G3V2L1 256 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 MAFKO60675 156 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 ZNF189O75820 626 aaPredicted RBP19.69■□□□□ 0.74
COL9A3-201ENST00000343916 UPP2O95045 317 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 CCND3P30281 292 aaPredicted RBP19.69■□□□□ 0.74
COL9A3-201ENST00000343916 IDH3AP50213 366 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 MXRA7P84157 204 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 YWHAHQ04917 246 aaPredicted RBP19.69■□□□□ 0.74
COL9A3-201ENST00000343916 CACNB2Q08289 660 aaPredicted RBP19.69■□□□□ 0.74
COL9A3-201ENST00000343916 RABGAP1LQ5R372 815 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 CLEC14AQ86T13 490 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 MCMBPQ9BTE3 642 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 THTPAQ9BU02 230 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 SHCBP1LQ9BZQ2 653 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 MMADHCQ9H3L0 296 aaPredicted RBP19.69■□□□□ 0.74
COL9A3-201ENST00000343916 PTPRDP23468 1912 aa19.69■□□□□ 0.74
COL9A3-201ENST00000343916 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.68■□□□□ 0.74
COL9A3-201ENST00000343916 TNFRSF10BO14763 440 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 PHGDHO43175 533 aaKnown RBP19.68■□□□□ 0.74
COL9A3-201ENST00000343916 CCNCP24863 283 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 CCR1P32246 355 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 AVPR1AP37288 418 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 ITGA7Q13683 1181 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 THOC5Q13769 683 aaKnown RBP19.68■□□□□ 0.74
COL9A3-201ENST00000343916 ARTNQ5T4W7 220 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 NAIF1Q69YI7 327 aaPredicted RBP19.68■□□□□ 0.74
COL9A3-201ENST00000343916 RAPH1Q70E73 1250 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 ZNF280BQ86YH2 543 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 ZNF781Q8N8C0 355 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 SUSD3Q96L08 255 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 OSER1Q9NX31 292 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 ABI2Q9NYB9 513 aaPredicted RBP19.68■□□□□ 0.74
COL9A3-201ENST00000343916 PLA2G4CQ9UP65 541 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 NLRC5Q86WI3 1866 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 TK2O00142 265 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 ZNF195O14628 629 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 SIN3BO75182 1162 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 PEX19P40855 299 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 COG7P83436 770 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 PRKCZQ05513 592 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 SLC39A12Q504Y0 691 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 C14orf80Q86SX3 495 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 DENND6AQ8IWF6 608 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 SCML4Q8N228 414 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 SHKBP1Q8TBC3 707 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 SH3TC2Q8TF17 1288 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 TBL1YQ9BQ87 522 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 FICDQ9BVA6 458 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 KIFC1Q9BW19 673 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 NMRAL1Q9HBL8 299 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 MAN1C1Q9NR34 630 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 NOD1Q9Y239 953 aa19.68■□□□□ 0.74
COL9A3-201ENST00000343916 COL4A4P53420 1690 aaPredicted RBP19.68■□□□□ 0.74
COL9A3-201ENST00000343916 A0A1W2PQH9 124 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 TIMM44O43615 452 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 GABRB3P28472 473 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 HARS2P49590 506 aaKnown RBP19.67■□□□□ 0.74
COL9A3-201ENST00000343916 TUBP50607 506 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 CTBP1Q13363 440 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 BLMHQ13867 455 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 FRG1Q14331 258 aaKnown RBP19.67■□□□□ 0.74
COL9A3-201ENST00000343916 ZC3HC1Q86WB0 502 aaKnown RBP19.67■□□□□ 0.74
COL9A3-201ENST00000343916 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.67■□□□□ 0.742e-6■■□□□ 12.2
COL9A3-201ENST00000343916 OR6Y1Q8NGX8 325 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 TSGA13Q96PP4 275 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 HAPLN3Q96S86 360 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 SIKE1Q9BRV8 207 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 FTHL17Q9BXU8 183 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 SMOC2Q9H3U7 446 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 CACNG3O60359 315 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 PMPCBO75439 489 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 VAPBO95292 243 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 MPOP05164 745 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 AOC1P19801 751 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 GLRBP48167 497 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 GPR15P49685 360 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 CAP1Q01518 475 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 MAPRE1Q15691 268 aaKnown RBP19.67■□□□□ 0.74
COL9A3-201ENST00000343916 CCDC6Q16204 474 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 MANEALQ5VSG8 457 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 LINC00523Q86TU6 105 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 SLC2A6Q9UGQ3 507 aa19.67■□□□□ 0.74
COL9A3-201ENST00000343916 AAR2Q9Y312 384 aaKnown RBP19.67■□□□□ 0.74
COL9A3-201ENST00000343916 TBX10O75333 385 aa19.66■□□□□ 0.74
COL9A3-201ENST00000343916 DDHD2O94830 711 aa19.66■□□□□ 0.74
COL9A3-201ENST00000343916 PSMG1O95456 288 aa19.66■□□□□ 0.74
COL9A3-201ENST00000343916 HSPA4LO95757 839 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms