RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TGFB1I1O43294 461 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ZC3H11AO75152 810 aaKnown RBP eCLIP8.81□□□□□ -11e-7■■■■□ 20.8
RTN3-202ENST00000339997 LYNP07948 512 aa8.81□□□□□ -1
RTN3-202ENST00000339997 LINC00032P0C843 101 aa8.81□□□□□ -1
RTN3-202ENST00000339997 HGFP14210 728 aa8.81□□□□□ -1
RTN3-202ENST00000339997 GOT1P17174 413 aa8.81□□□□□ -1
RTN3-202ENST00000339997 PRKCIP41743 596 aa8.81□□□□□ -1
RTN3-202ENST00000339997 PRKAG1P54619 331 aa8.81□□□□□ -1
RTN3-202ENST00000339997 GCNT1Q02742 428 aa8.81□□□□□ -1
RTN3-202ENST00000339997 PAGE2BQ5JRK9 111 aa8.81□□□□□ -1
RTN3-202ENST00000339997 FBXO47Q5MNV8 452 aa8.81□□□□□ -1
RTN3-202ENST00000339997 NEPROQ6NW34 567 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ZNF276Q8N554 614 aa8.81□□□□□ -1
RTN3-202ENST00000339997 C7orf57Q8NEG2 295 aa8.81□□□□□ -1
RTN3-202ENST00000339997 FNIP1Q8TF40 1166 aa8.81□□□□□ -1
RTN3-202ENST00000339997 NDRG1Q92597 394 aaKnown RBP8.81□□□□□ -1
RTN3-202ENST00000339997 HGH1Q9BTY7 390 aa8.81□□□□□ -1
RTN3-202ENST00000339997 OSGEPL1Q9H4B0 414 aa8.81□□□□□ -1
RTN3-202ENST00000339997 C17orf75Q9HAS0 396 aa8.81□□□□□ -1
RTN3-202ENST00000339997 PXMP2Q9NR77 195 aa8.81□□□□□ -1
RTN3-202ENST00000339997 KCND1Q9NSA2 647 aa8.81□□□□□ -1
RTN3-202ENST00000339997 MRPL39Q9NYK5 338 aaKnown RBP8.81□□□□□ -1
RTN3-202ENST00000339997 EFCAB10A6NFE3 127 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ATP6V1G1O75348 118 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ALADP13716 330 aa8.81□□□□□ -1
RTN3-202ENST00000339997 RRM2P31350 389 aa8.81□□□□□ -1
RTN3-202ENST00000339997 DLG2Q15700 870 aa8.81□□□□□ -1
RTN3-202ENST00000339997 TIGD2Q4W5G0 525 aa8.81□□□□□ -1
RTN3-202ENST00000339997 PPP1R15BQ5SWA1 713 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ERAP2Q6P179 960 aa8.81□□□□□ -1
RTN3-202ENST00000339997 GK5Q6ZS86 529 aa8.81□□□□□ -1
RTN3-202ENST00000339997 C4orf19Q8IY42 314 aa8.81□□□□□ -1
RTN3-202ENST00000339997 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.81□□□□□ -1
RTN3-202ENST00000339997 TNIP2Q8NFZ5 429 aa8.81□□□□□ -1
RTN3-202ENST00000339997 CLHC1Q8NHS4 586 aa8.81□□□□□ -1
RTN3-202ENST00000339997 LENG1Q96BZ8 264 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 CCDC126Q96EE4 140 aa8.81□□□□□ -1
RTN3-202ENST00000339997 TKTL2Q9H0I9 626 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ZNF395Q9H8N7 513 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 ZNF624Q9P2J8 865 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 CPA4Q9UI42 421 aa8.81□□□□□ -1
RTN3-202ENST00000339997 ZMYND8Q9ULU4 1186 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.81□□□□□ -1
RTN3-202ENST00000339997 CEP170BQ9Y4F5 1589 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 CYBBP04839 570 aa8.81□□□□□ -1
RTN3-202ENST00000339997 TFEBP19484 476 aa8.81□□□□□ -1
RTN3-202ENST00000339997 MPSTP25325 297 aa8.81□□□□□ -1
RTN3-202ENST00000339997 OR1E1P30953 314 aa8.81□□□□□ -1
RTN3-202ENST00000339997 PGM5Q15124 567 aa8.81□□□□□ -1
RTN3-202ENST00000339997 TSC22D1Q15714 1073 aa8.81□□□□□ -1
RTN3-202ENST00000339997 POM121L1PQ3SYA9 428 aa8.81□□□□□ -1
RTN3-202ENST00000339997 OGFOD2Q6N063 350 aa8.81□□□□□ -1
RTN3-202ENST00000339997 LDB1Q86U70 411 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 ERO1BQ86YB8 467 aa8.81□□□□□ -1
RTN3-202ENST00000339997 CAMK1DQ8IU85 385 aa8.81□□□□□ -1
RTN3-202ENST00000339997 PTGR2Q8N8N7 351 aaPredicted RBP8.81□□□□□ -1
RTN3-202ENST00000339997 IL31RAQ8NI17 732 aa8.81□□□□□ -1
RTN3-202ENST00000339997 FAR2Q96K12 515 aa8.81□□□□□ -1
RTN3-202ENST00000339997 GINS4Q9BRT9 223 aa8.81□□□□□ -1
RTN3-202ENST00000339997 SLC25A23Q9BV35 468 aa8.81□□□□□ -1
RTN3-202ENST00000339997 SNRNP25Q9BV90 132 aaKnown RBP8.81□□□□□ -1
RTN3-202ENST00000339997 ZNF518BQ9C0D4 1074 aa8.81□□□□□ -1
RTN3-202ENST00000339997 GNEQ9Y223 722 aaKnown RBP8.81□□□□□ -1
RTN3-202ENST00000339997 SLCO1B7G3V0H7 640 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ADAMTS3O15072 1205 aa8.8□□□□□ -1
RTN3-202ENST00000339997 PGAM1P18669 254 aa8.8□□□□□ -1
RTN3-202ENST00000339997 POLD2P49005 469 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ST13P50502 369 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 AFF2P51816 1311 aa8.8□□□□□ -1
RTN3-202ENST00000339997 SIM2Q14190 667 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 ARSHQ5FYA8 562 aa8.8□□□□□ -1
RTN3-202ENST00000339997 GALNT5Q7Z7M9 940 aa8.8□□□□□ -1
RTN3-202ENST00000339997 WDR49Q8IV35 697 aa8.8□□□□□ -1
RTN3-202ENST00000339997 KATNAL2Q8IYT4 538 aa8.8□□□□□ -1
RTN3-202ENST00000339997 IZUMO1Q8IYV9 350 aa8.8□□□□□ -1
RTN3-202ENST00000339997 PGBD3Q8N328 593 aa8.8□□□□□ -1
RTN3-202ENST00000339997 C2orf69Q8N8R5 385 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ZNF540Q8NDQ6 660 aa8.8□□□□□ -1
RTN3-202ENST00000339997 CERKQ8TCT0 537 aa8.8□□□□□ -1
RTN3-202ENST00000339997 MAGEB10Q96LZ2 347 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 TEKT5Q96M29 485 aa8.8□□□□□ -1
RTN3-202ENST00000339997 CRAMP1Q96RY5 1269 aa8.8□□□□□ -1
RTN3-202ENST00000339997 TRIM62Q9BVG3 475 aa8.8□□□□□ -1
RTN3-202ENST00000339997 HMG20AQ9NP66 347 aa8.8□□□□□ -1
RTN3-202ENST00000339997 ARHGEF3Q9NR81 526 aa8.8□□□□□ -1
RTN3-202ENST00000339997 MAP3K20Q9NYL2 800 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 RSL24D1Q9UHA3 163 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 OGDHLQ9ULD0 1010 aa8.8□□□□□ -1
RTN3-202ENST00000339997 LYVE1Q9Y5Y7 322 aa8.8□□□□□ -1
RTN3-202ENST00000339997 SEMA3DO95025 777 aa8.8□□□□□ -1
RTN3-202ENST00000339997 NADKO95544 446 aaPredicted RBP8.8□□□□□ -1
RTN3-202ENST00000339997 ITGA2BP08514 1039 aa8.8□□□□□ -1
RTN3-202ENST00000339997 BDNFP23560 247 aa8.8□□□□□ -1
RTN3-202ENST00000339997 AZGP1P25311 298 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 PIK3R1P27986 724 aa8.8□□□□□ -1
RTN3-202ENST00000339997 AKR1D1P51857 326 aa8.8□□□□□ -1
RTN3-202ENST00000339997 NR1H2P55055 460 aa8.8□□□□□ -1
RTN3-202ENST00000339997 PPP1R8Q12972 351 aaKnown RBP8.8□□□□□ -1
RTN3-202ENST00000339997 MYBPC2Q14324 1141 aa8.8□□□□□ -1
RTN3-202ENST00000339997 TAF1CQ15572 869 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms