RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 HS3ST2Q9Y278 367 aa22.63■■□□□ 1.21
SDC3-202ENST00000339394 KIAA1549LQ6ZVL6 1849 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 CXorf51AA0A1B0GTR3 108 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 ESPNB1AK53 854 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 SRPRAP08240 638 aaKnown RBP22.62■■□□□ 1.21
SDC3-202ENST00000339394 SLC20A2Q08357 652 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 LRRC32Q14392 662 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 ZNF234Q14588 700 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 SIX1Q15475 284 aaPredicted RBP22.62■■□□□ 1.21
SDC3-202ENST00000339394 B4GALNT4Q76KP1 1039 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 CREG2Q8IUH2 290 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 SYNPOQ8N3V7 929 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 CCDC26Q8TAB7 109 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 COL25A1Q9BXS0 654 aaPredicted RBP22.62■■□□□ 1.21
SDC3-202ENST00000339394 SMARCAL1Q9NZC9 954 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 SIT1Q9Y3P8 196 aa22.62■■□□□ 1.21
SDC3-202ENST00000339394 TMEM221A6NGB7 291 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 K7ERQ8 282 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 M0R296 226 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 PGRMC1O00264 195 aaKnown RBP22.61■■□□□ 1.21
SDC3-202ENST00000339394 PPP1R12AO14974 1030 aaPredicted RBP22.61■■□□□ 1.21
SDC3-202ENST00000339394 PEX11BO96011 259 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 CCNCP24863 283 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 MRPS21P82921 87 aaKnown RBP22.61■■□□□ 1.21
SDC3-202ENST00000339394 PPIDQ08752 370 aaKnown RBP22.61■■□□□ 1.21
SDC3-202ENST00000339394 CCDC105Q8IYK2 499 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 CHPFQ8IZ52 775 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 SH2D3CQ8N5H7 860 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 IL17RCQ8NAC3 791 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 ATP11CQ8NB49 1132 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 USP33Q8TEY7 942 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 BRD8Q9H0E9 1235 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 CACNA2D2Q9NY47 1150 aa22.61■■□□□ 1.21
SDC3-202ENST00000339394 WASH3PC4AMC7 463 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 SMAD6O43541 496 aaKnown RBP22.6■■□□□ 1.21
SDC3-202ENST00000339394 SRCP12931 536 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 NNMTP40261 264 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 IL12RB1P42701 662 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 SERPINH1P50454 418 aaKnown RBP22.6■■□□□ 1.21
SDC3-202ENST00000339394 VASPP50552 380 aaPredicted RBP22.6■■□□□ 1.21
SDC3-202ENST00000339394 GEMIN4P57678 1058 aaKnown RBP22.6■■□□□ 1.21
SDC3-202ENST00000339394 ST8SIA6P61647 398 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 AP1B1Q10567 949 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 XRCC4Q13426 336 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 Q6ZS52 159 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 KDM1BQ8NB78 822 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 RPLP0P6Q8NHW5 317 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 TFB1MQ8WVM0 346 aaKnown RBP22.6■■□□□ 1.21
SDC3-202ENST00000339394 MAIP1Q8WWC4 291 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 CAPZA3Q96KX2 299 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 NAP1L3Q99457 506 aaPredicted RBP22.6■■□□□ 1.21
SDC3-202ENST00000339394 TMEM245Q9H330 911 aa22.6■■□□□ 1.21
SDC3-202ENST00000339394 UBA2Q9UBT2 640 aaPredicted RBP22.6■■□□□ 1.21
SDC3-202ENST00000339394 TNFRSF10AO00220 468 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 NPC1O15118 1278 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 EIF3EP60228 445 aaKnown RBP22.59■■□□□ 1.21
SDC3-202ENST00000339394 ZNF33AQ06730 810 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 E2F5Q15329 346 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 FNDC3BQ53EP0 1204 aaKnown RBP22.59■■□□□ 1.21
SDC3-202ENST00000339394 INO80DQ53TQ3 878 aaPredicted RBP22.59■■□□□ 1.21
SDC3-202ENST00000339394 CWF19L1Q69YN2 538 aaKnown RBP22.59■■□□□ 1.21
SDC3-202ENST00000339394 TIGD7Q6NT04 549 aaPredicted RBP22.59■■□□□ 1.21
SDC3-202ENST00000339394 ALLCQ8N6M5 410 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 C1orf54Q8WWF1 131 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 ATG4AQ8WYN0 398 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 CLDN23Q96B33 292 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 ZNF599Q96NL3 588 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 MCF2LO15068 1137 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 MATN3O15232 486 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 ZNF500O60304 480 aaPredicted RBP22.59■■□□□ 1.21
SDC3-202ENST00000339394 RBP3P10745 1247 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 ENPP2Q13822 863 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 PRKD1Q15139 912 aaPredicted RBP22.59■■□□□ 1.21
SDC3-202ENST00000339394 SERPINA13PQ6UXR4 307 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 CCDC13Q8IYE1 715 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 TXNDC5Q8NBS9 432 aaKnown RBP22.59■■□□□ 1.21
SDC3-202ENST00000339394 EPHX3Q9H6B9 360 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 C10orf88Q9H8K7 445 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 FCF1Q9Y324 198 aaKnown RBP22.59■■□□□ 1.21
SDC3-202ENST00000339394 STON1Q9Y6Q2 735 aa22.59■■□□□ 1.21
SDC3-202ENST00000339394 MIA3Q5JRA6 1907 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 TTC34A8MYJ7 566 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 HACD1B0YJ81 288 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 H7C0C1 242 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 KCNK1O00180 336 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 ATP9BO43861 1147 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 DCNP07585 359 aaKnown RBP22.58■■□□□ 1.2
SDC3-202ENST00000339394 NTSR1P30989 418 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 ATP5OP48047 213 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 CLCN6P51797 869 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 SLC10A7Q0GE19 358 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 GAS6Q14393 721 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 DLG2Q15700 870 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 ACCSLQ4AC99 568 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 PKN3Q6P5Z2 889 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 TRMT11Q7Z4G4 463 aaKnown RBP22.58■■□□□ 1.2
SDC3-202ENST00000339394 ZNF366Q8N895 744 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 SLC35B2Q8TB61 432 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 FRS2Q8WU20 508 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 CASKIN2Q8WXE0 1202 aa22.58■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms