RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PACSIN1Q9BY11 444 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 FBXL12Q9NXK8 326 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 SARDHQ9UL12 918 aa16.18■□□□□ 0.18
CLN3-201ENST00000333496 CACNA1EQ15878 2313 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 TP53BP1Q12888 1972 aaPredicted RBP16.17■□□□□ 0.18
CLN3-201ENST00000333496 A0A1W2PP55 124 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 LNP1A1A4G5 178 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 METTL12A8MUP2 240 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 WASH4PA8MWX3 477 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 PRR5-ARHGAP8B1AHC4 643 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 MCF2LO15068 1137 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 ZNF500O60304 480 aaPredicted RBP16.17■□□□□ 0.18
CLN3-201ENST00000333496 FOXD2O60548 495 aaPredicted RBP16.17■□□□□ 0.18
CLN3-201ENST00000333496 TPM1P09493 284 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 MAOBP27338 520 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 IL1R2P27930 398 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 PSMD8P48556 350 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 IRX4P78413 519 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 ARHGAP8P85298 464 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 ACAP1Q15027 740 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 IL31Q6EBC2 164 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 DNASE2BQ8WZ79 361 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 FOXJ1Q92949 421 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 KCTD15Q96SI1 283 aaPredicted RBP16.17■□□□□ 0.18
CLN3-201ENST00000333496 BTBD1Q9H0C5 482 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 MAGEH1Q9H213 219 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 NEUROG2Q9H2A3 272 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 DHX35Q9H5Z1 703 aaKnown RBP16.17■□□□□ 0.18
CLN3-201ENST00000333496 C6orf106Q9H6K1 298 aaPredicted RBP16.17■□□□□ 0.18
CLN3-201ENST00000333496 DLL3Q9NYJ7 618 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 ANAPC7Q9UJX3 599 aa16.17■□□□□ 0.18
CLN3-201ENST00000333496 PRPSAP2O60256 369 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 RAMP2O60895 175 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 IL1BP01584 269 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 DRD3P35462 400 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 PCK1P35558 622 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 ID4P47928 161 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 SERPINH1P50454 418 aaKnown RBP16.16■□□□□ 0.18
CLN3-201ENST00000333496 CLCN6P51797 869 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 POLD3Q15054 466 aaPredicted RBP16.16■□□□□ 0.18
CLN3-201ENST00000333496 AASDHQ4L235 1098 aaPredicted RBP16.16■□□□□ 0.18
CLN3-201ENST00000333496 TRIM61Q5EBN2 209 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 DCAF12L1Q5VU92 463 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 RETSATQ6NUM9 610 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 C22orf39Q6P5X5 142 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 SLC23A3Q6PIS1 610 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 NIPA2Q8N8Q9 360 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 OR2A12Q8NGT7 310 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 OR8D1Q8WZ84 308 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 CATSPERBQ9H7T0 1116 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 NHEJ1Q9H9Q4 299 aaPredicted RBP16.16■□□□□ 0.18
CLN3-201ENST00000333496 ZNHIT6Q9NWK9 470 aaKnown RBP16.16■□□□□ 0.18
CLN3-201ENST00000333496 EVLQ9UI08 416 aaPredicted RBP16.16■□□□□ 0.18
CLN3-201ENST00000333496 PPM1HQ9ULR3 514 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 ZKSCAN5Q9Y2L8 839 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 TMEM131Q92545 1883 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 AKR1B15C9JRZ8 316 aaPredicted RBP16.16■□□□□ 0.18
CLN3-201ENST00000333496 RNF103O00237 685 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 KHNYNO15037 678 aaKnown RBP16.16■□□□□ 0.18
CLN3-201ENST00000333496 BNIP3LO60238 219 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 SEMA4FO95754 770 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 ADH1BP00325 375 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 CTSLP07711 333 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 C5AR1P21730 350 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 HOXD12P35452 270 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 ETFBP38117 255 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 TPI1P60174 286 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 SLC20A2Q08357 652 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 PIGHQ14442 188 aaPredicted RBP16.16■□□□□ 0.18
CLN3-201ENST00000333496 TXNRD3NBQ6F5E7 133 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 CNGA4Q8IV77 575 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 RGL4Q8IZJ4 473 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 TC2NQ8N9U0 490 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 KLC2Q9H0B6 622 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 TNKS2Q9H2K2 1166 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 DEF6Q9H4E7 631 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 SGK2Q9HBY8 427 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 NCKAP1Q9Y2A7 1128 aa16.16■□□□□ 0.18
CLN3-201ENST00000333496 ASCC3Q8N3C0 2202 aaKnown RBP16.15■□□□□ 0.18
CLN3-201ENST00000333496 SHROOM3Q8TF72 1996 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 CXorf51AA0A1B0GTR3 108 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 EIF3CLB5ME19 914 aaKnown RBP16.15■□□□□ 0.18
CLN3-201ENST00000333496 C10orf142B7Z368 130 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 PLK4O00444 970 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 ALOX15BO15296 676 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 FGF10O15520 208 aaPredicted RBP16.15■□□□□ 0.18
CLN3-201ENST00000333496 RNASEH2AO75792 299 aaKnown RBP16.15■□□□□ 0.18
CLN3-201ENST00000333496 GOT1P17174 413 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 HTR7P34969 479 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 DPP6P42658 865 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 DUOXA1Q1HG43 343 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 TSR1Q2NL82 804 aaKnown RBP16.15■□□□□ 0.18
CLN3-201ENST00000333496 KCNT1Q5JUK3 1230 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 SYCP2LQ5T4T6 812 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 PSTKQ8IV42 348 aaKnown RBP16.15■□□□□ 0.18
CLN3-201ENST00000333496 UMODL1-AS1Q8N2C9 162 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 HDDC3Q8N4P3 179 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 CHST14Q8NCH0 376 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 C1orf216Q8TAB5 229 aa16.15■□□□□ 0.18
CLN3-201ENST00000333496 PIP4K2CQ8TBX8 421 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms