RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 HDAC3O15379 428 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 AP2A1O95782 977 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 UQCRBP14927 111 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 SMPD1P17405 629 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 RPL14P50914 215 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 LIN52Q52LA3 116 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 FOXB2Q5VYV0 432 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 CWF19L1Q69YN2 538 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 DSELQ8IZU8 1212 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 ATPAF2Q8N5M1 289 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 NPWQ8N729 165 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 PRPF18Q99633 342 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 GRIP2Q9C0E4 1043 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 DNAJC28Q9NX36 388 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 CCDC167Q9P0B6 97 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 CEP350Q5VT06 3117 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 MYBPHLA2RUH7 354 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 CCL22O00626 93 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 TPST1O60507 370 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 IL1BP01584 269 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 TFEBP19484 476 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 MAGEA6P43360 314 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 NAPEPLDQ6IQ20 393 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 C16orf89Q6UX73 402 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 ZNF410Q86VK4 478 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 OLFM3Q96PB7 478 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 GAD1Q99259 594 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 NFKBIZQ9BYH8 718 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 WDR41Q9HAD4 459 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 ADARB2Q9NS39 739 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 DDX18Q9NVP1 670 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 MKS1Q9NXB0 559 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 GJD2Q9UKL4 321 aa13.11□□□□□ -0.31
HMGCS1-201ENST00000325110 ANO4Q32M45 955 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 SCN4BQ8IWT1 228 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 NXNL1Q96CM4 212 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 SENP8Q96LD8 212 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 SIKE1Q9BRV8 207 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 C15orf38-AP3S2A0A0A6YYH1 394 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 MEIS3P2A8K0S8 358 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 TREHO43280 583 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 DAB1O75553 588 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 MMP3P08254 477 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 SMIM10L2AP0DMW4 78 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 SMIM10L2BP0DMW5 78 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 STMN1P16949 149 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 CDK7P50613 346 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 PRAMEP78395 509 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 CDH17Q12864 832 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 SNAPC2Q13487 334 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 MAP7Q14244 749 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 PTK2BQ14289 1009 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 TAPT1Q6NXT6 567 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 AAGABQ6PD74 315 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 GK5Q6ZS86 529 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 CLEC20AQ6ZU45 233 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 ARPINQ7Z6K5 226 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 PQLC1Q8N2U9 271 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 GALNT15Q8N3T1 639 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 ACTRT2Q8TDY3 377 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 TMEM40Q8WWA1 233 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 KCNN1Q92952 543 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 ANLNQ9NQW6 1124 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 A0A1B0GVG6 124 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 PDHXO00330 501 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 DDHD2O94830 711 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 LRIG2O94898 1065 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 GSRP00390 522 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 ARSAP15289 507 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 BDNFP23560 247 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 PNPLA4P41247 253 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 PDAP1Q13442 181 aaKnown RBP13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 CNPY1Q3B7I2 92 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 FSTL5Q8N475 847 aaPredicted RBP13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 PABPC5Q96DU9 382 aaKnown RBP13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 TRAPPC9Q96Q05 1148 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 EPS15L1Q9UBC2 864 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 ZDHHC2Q9UIJ5 367 aa13.1□□□□□ -0.31
HMGCS1-201ENST00000325110 KIF3CO14782 793 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 BUD23O43709 281 aaKnown RBP13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 MPOP05164 745 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 JUNP05412 331 aaKnown RBP13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 DARSP14868 501 aaKnown RBP13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 CRABP2P29373 138 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 CHRNA4P43681 627 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 COG7P83436 770 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 TUBB3Q13509 450 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 NOMO2Q5JPE7 1267 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 LRRC8EQ6NSJ5 796 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 ESRP1Q6NXG1 681 aaKnown RBP13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 GPRIN1Q7Z2K8 1008 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 MFN1Q8IWA4 741 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 DCUN1D1Q96GG9 259 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 C1orf21Q9H246 121 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 SUDS3Q9H7L9 328 aaPredicted RBP13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 VTA1Q9NP79 307 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 DNAJC25-GNG10A0A024R161 153 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 CCL15-CCL14A0A0B4J2E2 113 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 FAM95CA0A1B0GW59 222 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 RGSL1A5PLK6 1076 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms