RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 CFAP97Q9P2B7 532 aa13.04□□□□□ -0.32
DDX39A-202ENST00000324340 MRPS23Q9Y3D9 190 aaKnown RBP13.04□□□□□ -0.32
DDX39A-202ENST00000324340 SH3BP1Q9Y3L3 701 aa13.04□□□□□ -0.32
DDX39A-202ENST00000324340 ZFP37Q9Y6Q3 630 aaPredicted RBP13.04□□□□□ -0.32
DDX39A-202ENST00000324340 CEP290O15078 2479 aa13.04□□□□□ -0.32
DDX39A-202ENST00000324340 MYO7AQ13402 2215 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 A0A0A0MRY4 1105 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 A0A1B0GVM2 712 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 TCAF2A6NFQ2 919 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 A6NHS1 94 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 DNALI1O14645 258 aaPredicted RBP13.03□□□□□ -0.32
DDX39A-202ENST00000324340 MAFKO60675 156 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 CLDN11O75508 207 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 HOXB8P17481 243 aaPredicted RBP13.03□□□□□ -0.32
DDX39A-202ENST00000324340 CHKAP35790 457 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 SGSHP51688 502 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 SEC24CP53992 1094 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 AP1B1Q10567 949 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 WASHC5Q12768 1159 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 GPS1Q13098 491 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 USP4Q13107 963 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 HLTFQ14527 1009 aaKnown RBP eCLIP13.03□□□□□ -0.32
DDX39A-202ENST00000324340 PARP15Q460N3 678 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 IZUMO3Q5VZ72 239 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 RNF43Q68DV7 783 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 TTC19Q6DKK2 380 aaPredicted RBP13.03□□□□□ -0.32
DDX39A-202ENST00000324340 HIBCHQ6NVY1 386 aaPredicted RBP13.03□□□□□ -0.32
DDX39A-202ENST00000324340 SYCE2Q6PIF2 218 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 TFAP2DQ7Z6R9 452 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 PCGF5Q86SE9 256 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 SETD3Q86TU7 594 aaPredicted RBP13.03□□□□□ -0.32
DDX39A-202ENST00000324340 CCDC63Q8NA47 563 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 CCNYQ8ND76 341 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 ZSCAN18Q8TBC5 510 aaPredicted RBP13.03□□□□□ -0.32
DDX39A-202ENST00000324340 FBXO25Q8TCJ0 367 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 SH3RF2Q8TEC5 729 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 LRRN4Q8WUT4 740 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 SPDL1Q96EA4 605 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 ZSWIM3Q96MP5 696 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 SPATA13Q96N96 652 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 VAT1Q99536 393 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 IGFLR1Q9H665 355 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 CCL26Q9Y258 94 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 TBC1D30Q9Y2I9 924 aa13.03□□□□□ -0.32
DDX39A-202ENST00000324340 FARP1Q9Y4F1 1045 aaPredicted RBP13.03□□□□□ -0.32
DDX39A-202ENST00000324340 SMAPO00193 183 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 RNF103O00237 685 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 LINC01565O15544 149 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 OPHN1O60890 802 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 PRAMEF12O95522 483 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 DRD4P21917 467 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 OR1E1P30953 314 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 MAGEA6P43360 314 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 VPS41P49754 854 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 PAPOLAP51003 745 aaKnown RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 ITGA8P53708 1063 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 NRLP54845 237 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 PLTPP55058 493 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 RPS24P62847 133 aaKnown RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 COL19A1Q14993 1142 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 MORF4L2Q15014 288 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 ZNF77Q15935 545 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 CTC1Q2NKJ3 1217 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 ANKRD20A2Q5SQ80 823 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 RARS2Q5T160 578 aaKnown RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 MPP7Q5T2T1 576 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 RNASEH2BQ5TBB1 312 aaKnown RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 ANKRD20A1Q5TYW2 823 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 ANKRD20A3Q5VUR7 823 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 TIGD7Q6NT04 549 aaPredicted RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 SDCCAG8Q86SQ7 713 aaPredicted RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 HOOK3Q86VS8 718 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 CIR1Q86X95 450 aaPredicted RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 BBS7Q8IWZ6 715 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 CFAP52Q8N1V2 620 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 ATPAF2Q8N5M1 289 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 HJURPQ8NCD3 748 aaPredicted RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 ITFG1Q8TB96 612 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 NSMCE1Q8WV22 266 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 CHMP6Q96FZ7 201 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 SMG9Q9H0W8 520 aaKnown RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 TTYH1Q9H313 450 aaPredicted RBP13.02□□□□□ -0.33
DDX39A-202ENST00000324340 KIF9Q9HAQ2 790 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 SLC24A3Q9HC58 644 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 SHOC2Q9UQ13 582 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 PLAAQ9Y263 795 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 NFS1Q9Y697 457 aa13.02□□□□□ -0.33
DDX39A-202ENST00000324340 LAMA2P24043 3122 aaKnown RBP13.01□□□□□ -0.33
DDX39A-202ENST00000324340 ARHGAP42A6NI28 874 aa13.01□□□□□ -0.33
DDX39A-202ENST00000324340 RASA4BC9J798 803 aa13.01□□□□□ -0.33
DDX39A-202ENST00000324340 DFFAO00273 331 aa13.01□□□□□ -0.33
DDX39A-202ENST00000324340 RASA4O43374 803 aa13.01□□□□□ -0.33
DDX39A-202ENST00000324340 RAMP2O60895 175 aa13.01□□□□□ -0.33
DDX39A-202ENST00000324340 STK10O94804 968 aaKnown RBP13.01□□□□□ -0.33
DDX39A-202ENST00000324340 FAM153BP0C7A2 387 aa13.01□□□□□ -0.33
DDX39A-202ENST00000324340 PTPN3P26045 913 aa13.01□□□□□ -0.33
DDX39A-202ENST00000324340 IFI35P80217 286 aaPredicted RBP13.01□□□□□ -0.33
DDX39A-202ENST00000324340 TNK2Q07912 1038 aa13.01□□□□□ -0.33
DDX39A-202ENST00000324340 POLD3Q15054 466 aaPredicted RBP13.01□□□□□ -0.33
DDX39A-202ENST00000324340 FAM153CQ494X1 144 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms