RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ADHFE1Q8IWW8 467 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 RAB42Q8N4Z0 105 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 RTL3Q8N8U3 475 aaKnown RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 KBTBD8Q8NFY9 601 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 MBOAT7Q96N66 472 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 DENND2DQ9H6A0 471 aaPredicted RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 DDX43Q9NXZ2 648 aaKnown RBP11.68□□□□□ -0.54
VPS39-201ENST00000318006 PACSIN3Q9UKS6 424 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 TOPAZ1Q8N9V7 1692 aa11.68□□□□□ -0.54
VPS39-201ENST00000318006 APOC4-APOC2K7ER74 178 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 APOC2P02655 101 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 IL6P05231 212 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ANXA6P08133 673 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 AKAP5P24588 427 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 MGAT1P26572 445 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 TNK2Q07912 1038 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 C11orf88Q6PI97 169 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ALYREFQ86V81 257 aaKnown RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 C11orf74Q86VG3 221 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 BLOC1S5Q8TDH9 187 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ACTRT2Q8TDY3 377 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 C17orf50Q8WW18 174 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 TMEM169Q96HH4 297 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 MTIF3Q9H2K0 278 aaKnown RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 NFASCO94856 1347 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 LOC100506127A0A0U1RQW1 187 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 H7C4K7 107 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 PLA2G6O60733 806 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 VCLP18206 1134 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 AXLP30530 894 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 HPCAP84074 193 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 TRAP1Q12931 704 aaKnown RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 NFE2Q16621 373 aaPredicted RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 DENND5AQ6IQ26 1287 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 BPIFB6Q8NFQ5 453 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ZHX1-C8orf76Q96EF9 292 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 CINPQ9BW66 212 aaPredicted RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 SLC4A5Q9BY07 1137 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 DPY30Q9C005 99 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 SPAG4Q9NPE6 437 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 BIRC5O15392 142 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 NCAM2O15394 837 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 MAGEC1O60732 1142 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 LGR5O75473 907 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 TM7SF2O76062 418 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 JCHAINP01591 159 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 HMGCRP04035 888 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 LGALS2P05162 132 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 FLT3P36888 993 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 NEK3P51956 506 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ECM1Q16610 540 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 PGS1Q32NB8 556 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 PPP1R15BQ5SWA1 713 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 RNF19BQ6ZMZ0 732 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 NUDT18Q6ZVK8 323 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ZNF605Q86T29 641 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ACSS3Q9H6R3 686 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 PNMA8BQ9ULN7 279 aaPredicted RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 CCDC182A6NF36 153 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 CASTOR2A6NHX0 329 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ADCYAP1R1P41586 468 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 CNTN1Q12860 1018 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ZNF177Q13360 481 aaPredicted RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 CELF3Q5SZQ8 465 aaKnown RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 TTC30AQ86WT1 665 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 FAM71AQ8IYT1 594 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 ASB2Q96Q27 587 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 PURBQ96QR8 312 aaKnown RBP11.67□□□□□ -0.54
VPS39-201ENST00000318006 EPB41L1Q9H4G0 881 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 TAS2R14Q9NYV8 317 aa11.67□□□□□ -0.54
VPS39-201ENST00000318006 F5H5T6 163 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 TPP1O14773 563 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 RXRGP48443 463 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 YWHAZP63104 245 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 CDH17Q12864 832 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 ARHGEF7Q14155 803 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 MFSD10Q14728 455 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 CTXN3Q4LDR2 81 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 ZBTB46Q86UZ6 589 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 PALB2Q86YC2 1186 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 TBC1D19Q8N5T2 526 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 WDR36Q8NI36 951 aaKnown RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 HASPINQ8TF76 798 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 CENPIQ92674 756 aaPredicted RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 SEMA4DQ92854 862 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 OSBPL6Q9BZF3 934 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 MID1IP1Q9NPA3 183 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 RAB26Q9ULW5 256 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 GMEB1Q9Y692 573 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 CASZ1Q86V15 1759 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 CAPN8A6NHC0 703 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 HOXA2O43364 376 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 ARPC4P59998 168 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 MAD2L1Q13257 205 aaPredicted RBP11.66□□□□□ -0.54
VPS39-201ENST00000318006 PPIL2Q13356 520 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 DPYSQ14117 519 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 IQSEC1Q6DN90 963 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 PPP4R4Q6NUP7 873 aa11.66□□□□□ -0.54
VPS39-201ENST00000318006 POLNQ7Z5Q5 900 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms