RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PRAMEF14Q5SWL7 426 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 CCDC183Q5T5S1 534 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 ARCQ7LC44 396 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 BNIPLQ7Z465 357 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 GLRX5Q86SX6 157 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 DRC7Q8IY82 874 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 JOSD2Q8TAC2 188 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 BAHD1Q8TBE0 780 aaPredicted RBP19.99■□□□□ 0.79
LIME1-201ENST00000309546 SPON2Q9BUD6 331 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 ZMIZ1Q9ULJ6 1067 aa19.99■□□□□ 0.79
LIME1-201ENST00000309546 CBX4O00257 560 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 KPNA3O00505 521 aaPredicted RBP19.98■□□□□ 0.79
LIME1-201ENST00000309546 MBD3O95983 291 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 GRK6P43250 576 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 ARL13BQ3SXY8 428 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 CCDC14Q49A88 953 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 SLC45A4Q5BKX6 768 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 AGBL4Q5VU57 503 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 C22orf39Q6P5X5 142 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 DBX2Q6ZNG2 339 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 PRPF39Q86UA1 669 aaKnown RBP19.98■□□□□ 0.79
LIME1-201ENST00000309546 SLCO6A1Q86UG4 719 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 GRIN3AQ8TCU5 1115 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 ADAMTS14Q8WXS8 1223 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 ZCCHC14Q8WYQ9 949 aaKnown RBP19.98■□□□□ 0.79
LIME1-201ENST00000309546 FAM131CQ96AQ9 280 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 PCDHB18PQ96TA0 734 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 CDC6Q99741 560 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 TNKS2Q9H2K2 1166 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 ATP13A1Q9HD20 1204 aa19.98■□□□□ 0.79
LIME1-201ENST00000309546 TPX2Q9ULW0 747 aaKnown RBP19.98■□□□□ 0.79
LIME1-201ENST00000309546 A0A1B0GTQ1 180 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 SMAD6O43541 496 aaKnown RBP19.97■□□□□ 0.79
LIME1-201ENST00000309546 ENDOD1O94919 500 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 CTSLP07711 333 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 ATXN1LP0C7T5 689 aaKnown RBP19.97■□□□□ 0.79
LIME1-201ENST00000309546 UNGP13051 313 aaPredicted RBP19.97■□□□□ 0.79
LIME1-201ENST00000309546 CHRNA3P32297 505 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 RECQLP46063 649 aaPredicted RBP19.97■□□□□ 0.79
LIME1-201ENST00000309546 INAVAQ3KP66 663 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 NAPEPLDQ6IQ20 393 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 RWDD4Q6NW29 188 aaKnown RBP19.97■□□□□ 0.79
LIME1-201ENST00000309546 GATAD2AQ86YP4 633 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 AOPEPQ8N6M6 819 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 CHST14Q8NCH0 376 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 OR2A12Q8NGT7 310 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 ELF4Q99607 663 aaPredicted RBP19.97■□□□□ 0.79
LIME1-201ENST00000309546 SELENOOQ9BVL4 669 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 KDM4CQ9H3R0 1056 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 GDF3Q9NR23 364 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 ADAM22Q9P0K1 906 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 PTPRBP23467 1997 aa19.97■□□□□ 0.79
LIME1-201ENST00000309546 A0A1W2PR77 199 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 ILVBLA1L0T0 632 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 TMEM8BA6NDV4 472 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 C2CD4BA6NLJ0 364 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 C10orf142B7Z368 130 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 LATO43561 262 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 PCDHGA12O60330 932 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 DFNA5O60443 496 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 KRT3P12035 628 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 CLCN6P51797 869 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 GNA12Q03113 381 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 TYRO3Q06418 890 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 NCAPHQ15003 741 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 CLEC16AQ2KHT3 1053 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 CCDC157Q569K6 752 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 ARTNQ5T4W7 220 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 RETSATQ6NUM9 610 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 DYRK4Q9NR20 520 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 PPARGC1AQ9UBK2 798 aaKnown RBP19.96■□□□□ 0.79
LIME1-201ENST00000309546 ZNF212Q9UDV6 495 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 OR12D3Q9UGF7 316 aa19.96■□□□□ 0.79
LIME1-201ENST00000309546 PRNPP04156 253 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 CALB1P05937 261 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 ADRA1BP35368 520 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 PTPN9P43378 593 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 PTP4A2Q12974 167 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 PIP5KL1Q5T9C9 394 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 ZNF783Q6ZMS7 281 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 STRADAQ7RTN6 431 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 TRIM69Q86WT6 500 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 CCDC185Q8N715 623 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 KDF1Q8NAX2 398 aaPredicted RBP19.95■□□□□ 0.78
LIME1-201ENST00000309546 FAM172AQ8WUF8 416 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 ARRDC3Q96B67 414 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 ERGIC2Q96RQ1 377 aa19.95■□□□□ 0.78
LIME1-201ENST00000309546 TLR4O00206 839 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 RNGTTO60942 597 aaKnown RBP19.94■□□□□ 0.78
LIME1-201ENST00000309546 ITGAVP06756 1048 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 ATP1A3P13637 1013 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 GPD1P21695 349 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 SERPINH1P50454 418 aaKnown RBP19.94■□□□□ 0.78
LIME1-201ENST00000309546 DNA2P51530 1060 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 TAS2R38P59533 333 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 ARF5P84085 180 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 SETMARQ53H47 684 aaPredicted RBP19.94■□□□□ 0.78
LIME1-201ENST00000309546 DPY19L3Q6ZPD9 716 aa19.94■□□□□ 0.78
LIME1-201ENST00000309546 PHF13Q86YI8 300 aaPredicted RBP19.94■□□□□ 0.78
LIME1-201ENST00000309546 KLK6Q92876 244 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms