RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 APBA2Q99767 749 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 EFCAB1Q9HAE3 211 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 DTLQ9NZJ0 730 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 MPP6Q9NZW5 540 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 ZNF229Q9UJW7 825 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 RUVBL2Q9Y230 463 aaKnown RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 DRG1Q9Y295 367 aaKnown RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 FAM149AA5PLN7 773 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 NRP1O14786 923 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 PMM2O15305 246 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 FAM189A1O60320 539 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 SNAI1O95863 264 aaPredicted RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 MT-CYBP00156 380 aaPredicted RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 PIGRP01833 764 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 GRIK1P39086 918 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 CTBP1Q13363 440 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 PRKD1Q15139 912 aaPredicted RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 PERM1Q5SV97 790 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 KLHL23Q8NBE8 558 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 SCAMP5Q8TAC9 235 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 GABPB2Q8TAK5 448 aaPredicted RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 BRI3BPQ8WY22 251 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 JADE3Q92613 823 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 XPNPEP3Q9NQH7 507 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 NDUFA13Q9P0J0 144 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 KIAA0100Q14667 2235 aaKnown RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 ZNF839A8K0R7 811 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 CXCL11O14625 94 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 MMP3P08254 477 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 SPRP35270 261 aaPredicted RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 BST2Q10589 180 aaKnown RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 MTX3Q5HYI7 312 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 PITRM1Q5JRX3 1037 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 DRAXINQ8NBI3 349 aaPredicted RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 B3GALNT2Q8NCR0 500 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 RMND5BQ96G75 393 aaPredicted RBP12.88□□□□□ -0.35
RETREG3-201ENST00000309428 SEPHS2Q99611 448 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 SYT17Q9BSW7 474 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 SLC4A5Q9BY07 1137 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 COG4Q9H9E3 785 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 WDR41Q9HAD4 459 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 CHRAC1Q9NRG0 131 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 ITGA11Q9UKX5 1188 aa12.88□□□□□ -0.35
RETREG3-201ENST00000309428 SDR42E2A6NKP2 422 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 TTC36A6NLP5 189 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 ERCC2P18074 760 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 ME2P23368 584 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 CLCNKBP51801 687 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 BCAT1P54687 386 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 TRAF2Q12933 501 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 LRRC38Q5VT99 294 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 ZNF280DQ6N043 979 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 LCLAT1Q6UWP7 414 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 FRMD7Q6ZUT3 714 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 PLEKHH3Q7Z736 793 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 NAT16Q8N8M0 369 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 DDHD1Q8NEL9 900 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 SENP8Q96LD8 212 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 OXCT2Q9BYC2 517 aaPredicted RBP12.87□□□□□ -0.35
RETREG3-201ENST00000309428 RRAGCQ9HB90 399 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 PCDHGC3Q9UN70 934 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 HEMK1Q9Y5R4 338 aaPredicted RBP12.87□□□□□ -0.35
RETREG3-201ENST00000309428 NUMBLQ9Y6R0 609 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 MPSTP25325 297 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 EIF2B2P49770 351 aaKnown RBP12.87□□□□□ -0.35
RETREG3-201ENST00000309428 SNX16P57768 344 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 MFSD10Q14728 455 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 GPR107Q5VW38 600 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 ARRDC4Q8NCT1 418 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 TKTL2Q9H0I9 626 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 ZNF180Q9UJW8 692 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 ADAMTS6Q9UKP5 1117 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 STAP1Q9ULZ2 295 aa12.87□□□□□ -0.35
RETREG3-201ENST00000309428 UBQLN1Q9UMX0 589 aaKnown RBP12.87□□□□□ -0.35
RETREG3-201ENST00000309428 IGKV6D-21A0A0A0MT36 114 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 SMIM31A0A1B0GVY4 71 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 C3orf70A6NLC5 250 aaPredicted RBP12.86□□□□□ -0.35
RETREG3-201ENST00000309428 MAGEC1O60732 1142 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 YWHAHQ04917 246 aaPredicted RBP12.86□□□□□ -0.35
RETREG3-201ENST00000309428 PATL1Q86TB9 770 aaKnown RBP12.86□□□□□ -0.35
RETREG3-201ENST00000309428 OSTM1Q86WC4 334 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 FBXW8Q8N3Y1 598 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 FAM47BQ8NA70 645 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 CMASQ8NFW8 434 aaPredicted RBP12.86□□□□□ -0.35
RETREG3-201ENST00000309428 VPS50Q96JG6 964 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 ZNF778Q96MU6 729 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 C16orf70Q9BSU1 422 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 FAM96AQ9H5X1 160 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 WDCPQ9H6R7 721 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 TRPC7Q9HCX4 862 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 TRMUO75648 421 aaKnown RBP12.86□□□□□ -0.35
RETREG3-201ENST00000309428 TCEA3O75764 348 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 CLDN10P78369 228 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 ITGADQ13349 1161 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 KRT72Q14CN4 511 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 TRIM16LQ309B1 348 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 ZIK1Q3SY52 487 aaPredicted RBP12.86□□□□□ -0.35
RETREG3-201ENST00000309428 TAPT1Q6NXT6 567 aa12.86□□□□□ -0.35
RETREG3-201ENST00000309428 OLFML1Q6UWY5 402 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms