RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 MAFFQ9ULX9 164 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 GMPPBQ9Y5P6 360 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 WDR27A2RRH5 827 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 PCP4L1A6NKN8 68 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 RLN1P04808 185 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 ALDH2P05091 517 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 KLRC2P26717 231 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 IL12AP29459 219 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 FAUP35544 74 aaKnown RBP10.53□□□□□ -0.72
CLIP1-201ENST00000302528 RPS6KA3P51812 740 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 PPP2R2BQ00005 443 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 ELAVL2Q12926 359 aaKnown RBP10.53□□□□□ -0.72
CLIP1-201ENST00000302528 PPIL2Q13356 520 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 ZNF484Q5JVG2 852 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 PERM1Q5SV97 790 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 TTC27Q6P3X3 843 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 SLC9A6Q92581 669 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 FAM84BQ96KN1 310 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-201ENST00000302528 CEP41Q9BYV8 373 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 ATXN3LQ9H3M9 355 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 GGA3Q9NZ52 723 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 NUDT5Q9UKK9 219 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 ITGB1BP2Q9UKP3 347 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 ANGPT4Q9Y264 503 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 RFX7Q2KHR2 1363 aa10.53□□□□□ -0.72
CLIP1-201ENST00000302528 A0A096LPK6 155 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 FOXN3O00409 490 aaPredicted RBP10.52□□□□□ -0.72
CLIP1-201ENST00000302528 TOP3BO95985 862 aaKnown RBP10.52□□□□□ -0.72
CLIP1-201ENST00000302528 PGAM1P18669 254 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 CYP4F2P78329 520 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 CYP4F3Q08477 520 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 NR1D2Q14995 579 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 PYHIN1Q6K0P9 492 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 GPSM1Q86YR5 675 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 UBE2E3Q969T4 207 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 ERLEC1Q96DZ1 483 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 DMGDHQ9UI17 866 aaKnown RBP10.52□□□□□ -0.72
CLIP1-201ENST00000302528 TUBE1Q9UJT0 475 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 DAGLAQ9Y4D2 1042 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 CDHR2Q9BYE9 1310 aa10.52□□□□□ -0.72
CLIP1-201ENST00000302528 MOXD2PA6NHM9 499 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 CYP11B2P19099 503 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 LRPAP1P30533 357 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 MNDAP41218 407 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 LSM3P62310 102 aaKnown RBP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 RAPSNQ13702 412 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 SCARF1Q14162 830 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 ACAP1Q15027 740 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 SPANXN3Q5MJ09 141 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 FBXL19Q6PCT2 694 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 OLFML1Q6UWY5 402 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 CPNE1Q99829 537 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 FAM126AQ9BYI3 521 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 LMAN2LQ9H0V9 348 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 SMPD4Q9NXE4 827 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 RPS6KA6Q9UK32 745 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 MDM4O15151 490 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 CATP04040 527 aaKnown RBP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 CYP11B1P15538 503 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 SMIM11AP58511 58 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 POLR2LP62875 67 aaKnown RBP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 RPL19P84098 196 aaKnown RBP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 MYBPC3Q14896 1274 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 CLEC10AQ8IUN9 316 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 DEPDC4Q8N2C3 294 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 ZNF540Q8NDQ6 660 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 ZNF483Q8TF39 744 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 SELENOMQ8WWX9 145 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 PIGKQ92643 395 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 KLQ9UEF7 1012 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 PFDN2Q9UHV9 154 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 TBC1D24Q9ULP9 559 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 TFR2Q9UP52 801 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 A8MX80 341 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 NOS1APO75052 506 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 VAPBO95292 243 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 PRKAR2AP13861 404 aaKnown RBP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 CXCR2P25025 360 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 PDX1P52945 283 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 IRF8Q02556 426 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 MTA1Q13330 715 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 KCNA10Q16322 511 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 NRF1Q16656 503 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 SLC45A4Q5BKX6 768 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 TMEM63BQ5T3F8 832 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 BHLHB9Q6PI77 547 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 TCAIMQ8N3R3 496 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 OR10H5Q8NGA6 315 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 EDEM1Q92611 657 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 CPB2Q96IY4 423 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 GPER1Q99527 375 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 CDADC1Q9BWV3 514 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 ZNF70Q9UC06 446 aaPredicted RBP10.52□□□□□ -0.73
CLIP1-201ENST00000302528 PCDHB5Q9Y5E4 795 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 NRXN1Q9ULB1 1477 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 CASTOR2A6NHX0 329 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 NDUFS2O75306 463 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 ENTPD3O75355 529 aa10.52□□□□□ -0.73
CLIP1-201ENST00000302528 NR2F1P10589 423 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms