RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 ACOX2Q99424 681 aa9.68□□□□□ -0.86
RFX3-201ENST00000302303 IL12RB2Q99665 862 aa9.68□□□□□ -0.86
RFX3-201ENST00000302303 P2RY13Q9BPV8 354 aa9.68□□□□□ -0.86
RFX3-201ENST00000302303 TMEM121Q9BTD3 319 aa9.68□□□□□ -0.86
RFX3-201ENST00000302303 MUC3BQ9H195 1237 aa9.68□□□□□ -0.86
RFX3-201ENST00000302303 ATP13A1Q9HD20 1204 aa9.68□□□□□ -0.86
RFX3-201ENST00000302303 VPS28Q9UK41 221 aa9.68□□□□□ -0.86
RFX3-201ENST00000302303 HS3ST2Q9Y278 367 aa9.68□□□□□ -0.86
RFX3-201ENST00000302303 CXorf51AA0A1B0GTR3 108 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 HACD1B0YJ81 288 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 RNF103O00237 685 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 CBX4O00257 560 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 GJB3O75712 270 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 ITGAVP06756 1048 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 SRCP12931 536 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 ETS1P14921 441 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 MX2P20592 715 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 CD68P34810 354 aaPredicted RBP9.67□□□□□ -0.86
RFX3-201ENST00000302303 COILP38432 576 aaPredicted RBP9.67□□□□□ -0.86
RFX3-201ENST00000302303 RGRP47804 291 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 CLCN6P51797 869 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 ECT2LQ008S8 904 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 TUBB2AQ13885 445 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 BYSLQ13895 437 aaKnown RBP9.67□□□□□ -0.86
RFX3-201ENST00000302303 WHAMMP3Q1A5X7 153 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 TPRG1Q6ZUI0 275 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 UBALD2Q8IYN6 164 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 ZNF557Q8N988 423 aaPredicted RBP9.67□□□□□ -0.86
RFX3-201ENST00000302303 SPDYE1Q8NFV5 336 aaPredicted RBP9.67□□□□□ -0.86
RFX3-201ENST00000302303 WFIKKN2Q8TEU8 576 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 TFB1MQ8WVM0 346 aaKnown RBP9.67□□□□□ -0.86
RFX3-201ENST00000302303 MAIP1Q8WWC4 291 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 MAGOHBQ96A72 148 aaKnown RBP9.67□□□□□ -0.86
RFX3-201ENST00000302303 GORASP1Q9BQQ3 440 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 TUBB2BQ9BVA1 445 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 FRMD8P1Q9BZ68 369 aaPredicted RBP9.67□□□□□ -0.86
RFX3-201ENST00000302303 BRD8Q9H0E9 1235 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 DDX47Q9H0S4 455 aaKnown RBP9.67□□□□□ -0.86
RFX3-201ENST00000302303 TMEM245Q9H330 911 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 CD248Q9HCU0 757 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 ZDHHC4Q9NPG8 344 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 CA14Q9ULX7 337 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 ERVW-1Q9UQF0 538 aa9.67□□□□□ -0.86
RFX3-201ENST00000302303 TBC1D3BA6NDS4 549 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 WASH3PC4AMC7 463 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 BHMG1C9JSJ3 638 aaPredicted RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 MCF2LO15068 1137 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 TIMM44O43615 452 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 ATP9BO43861 1147 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 PHF2O75151 1096 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 DLDP09622 509 aaKnown RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 ZSCAN5DPP0CG00 497 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 CHRNB1P11230 501 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 CCNB1P14635 433 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 HNRNPLP14866 589 aaKnown RBP eCLIP9.66□□□□□ -0.865e-9■■■■□ 21
RFX3-201ENST00000302303 CR2P20023 1033 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 PTPN3P26045 913 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 TARSP26639 723 aaKnown RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 ETFBP38117 255 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 PAFAH1B1P43034 410 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 TNFRSF4P43489 277 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 SERPINH1P50454 418 aaKnown RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 IFI35P80217 286 aaPredicted RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 ZXDAP98168 799 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 PRKCQQ04759 706 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 C2orf54Q08AI8 447 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 AP1B1Q10567 949 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 HNRNPDQ14103 355 aaKnown RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 INO80DQ53TQ3 878 aaPredicted RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 CCDC181Q5TID7 509 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 EGFLAMQ63HQ2 1017 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 PKN3Q6P5Z2 889 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 BZW1Q7L1Q6 419 aaKnown RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 CCDC13Q8IYE1 715 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 SH2D3CQ8N5H7 860 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 ATPAF2Q8N5M1 289 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 ALLCQ8N6M5 410 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 NOA1Q8NC60 698 aaKnown RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 TSEN2Q8NCE0 465 aaKnown RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 CCNYQ8ND76 341 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 HTR3CQ8WXA8 447 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 FAM3CQ92520 227 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 SLCO2A1Q92959 643 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 MSANTD3Q96H12 275 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 ZNF599Q96NL3 588 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 NAP1L3Q99457 506 aaPredicted RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 C2orf49Q9BVC5 232 aaPredicted RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 CEP41Q9BYV8 373 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 MTG2Q9H4K7 406 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 ARHGEF3Q9NR81 526 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 THAP10Q9P2Z0 257 aaPredicted RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 LHX3Q9UBR4 397 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 PCYOX1Q9UHG3 505 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 ATP8A1Q9Y2Q0 1164 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 C5orf60A6NFR6 353 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 TTC34A8MYJ7 566 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 H7C0C1 242 aa9.66□□□□□ -0.86
RFX3-201ENST00000302303 PPP1R12AO14974 1030 aaPredicted RBP9.66□□□□□ -0.86
RFX3-201ENST00000302303 TP73O15350 636 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms