RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TBC1D30Q9Y2I9 924 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 OR51B4Q9Y5P0 310 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 TRPM6Q9BX84 2022 aa15.16■□□□□ 0.02
CCDC88B-201ENST00000301897 A0A1W2PQU0 124 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 OPA1O60313 960 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 PIAS2O75928 621 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 AFPP02771 609 aaKnown RBP15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 PRNPP04156 253 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 LSSP48449 732 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 CLCN6P51797 869 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 CDH4P55283 916 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 TAS2R38P59533 333 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 HNRNPKP61978 463 aaKnown RBP eCLIP15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 CFHR1Q03591 330 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 ZNF284Q2VY69 593 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 POM121L1PQ3SYA9 428 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 TAF1BQ53T94 588 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 ACBD5Q5T8D3 534 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 PIP5KL1Q5T9C9 394 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 CDCP2Q5VXM1 449 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 TTI2Q6NXR4 508 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 ZSCAN30Q86W11 494 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 TRIM59Q8IWR1 403 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 ELOA2Q8IYF1 753 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 FAM181AQ8N9Y4 354 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 GRAMD1AQ96CP6 724 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 PPP1R16AQ96I34 528 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 HIC2Q96JB3 615 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 NOX5Q96PH1 765 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 DPH1Q9BZG8 443 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 ABCG4Q9H172 646 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 POLR1BQ9H9Y6 1135 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 UBE2TQ9NPD8 197 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 VANGL2Q9ULK5 521 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 SPTA1P02549 2419 aa15.15■□□□□ 0.02
CCDC88B-201ENST00000301897 PIEZO2Q9H5I5 2752 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 SYNJ2BP-COX16A0A087WUM0 186 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 KPNA3O00505 521 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 BNIP3LO60238 219 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 CHRNA3P32297 505 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 MARSP56192 900 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 PITX1P78337 314 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 CENPCQ03188 943 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 C5orf22Q49AR2 442 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 TMC6Q7Z403 805 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 ABI3BPQ7Z7G0 1075 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 DEFB106AQ8N104 65 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 ATP11CQ8NB49 1132 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 COL26A1Q96A83 441 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 CALN1Q9BXU9 219 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 HDAC8Q9BY41 377 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 THSD1Q9NS62 852 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 RRN3Q9NYV6 651 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 COX16Q9P0S2 106 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 CA5BQ9Y2D0 317 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 PAXBP1Q9Y5B6 917 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 HS3ST3A1Q9Y663 406 aa15.14■□□□□ 0.01
CCDC88B-201ENST00000301897 A6NNZ2 444 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 SCAMP1O15126 338 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 FFAR2O15552 330 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 LZTS3O60299 673 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 ZIC2O95409 532 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 FGFR1OPO95684 399 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 SRCP12931 536 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 PRLRP16471 622 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 RECQLP46063 649 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 NUMBP49757 651 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 GABREP78334 506 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 TAF5Q15542 800 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 KLHL10Q6JEL2 608 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 IGF2-ASQ6U949 168 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 C11orf57Q6ZUT1 292 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 ERN2Q76MJ5 926 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 SETD3Q86TU7 594 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 OR13H1Q8NG92 308 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 NELFBQ8WX92 580 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 PPP1R13BQ96KQ4 1090 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 APOLD1Q96LR9 279 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 UCKL1Q9NWZ5 548 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 PCDHB1Q9Y5F3 818 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 HS3ST4Q9Y661 456 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 MYO18BQ8IUG5 2567 aa15.13■□□□□ 0.01
CCDC88B-201ENST00000301897 H3BM21 787 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 J3QKU1 62 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 USP12O75317 370 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 CSO75390 466 aaKnown RBP15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 PAGE1O75459 146 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 PCDH8O95206 1070 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 MPOP05164 745 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 CTSLP07711 333 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 RHOCP08134 193 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 NOS2P35228 1153 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 NME3Q13232 169 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 BRMS1LQ5PSV4 323 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 KIAA1161Q6NSJ0 714 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 LRRC31Q6UY01 552 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 DCAF4L2Q8NA75 395 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 OR52K2Q8NGK3 314 aa15.12■□□□□ 0.01
CCDC88B-201ENST00000301897 OR2A12Q8NGT7 310 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms