RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 OSER1Q9NX31 292 aa20.42■□□□□ 0.86
VPS53-201ENST00000291074 ABI2Q9NYB9 513 aaPredicted RBP20.42■□□□□ 0.86
VPS53-201ENST00000291074 A0A1W2PQH9 124 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 G3V2L1 256 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 GRK2P25098 689 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 CCR1P32246 355 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 ERFP50548 548 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 FRG1Q14331 258 aaKnown RBP20.41■□□□□ 0.86
VPS53-201ENST00000291074 CCDC153Q494R4 210 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 RABGAP1LQ5R372 815 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 TBL1YQ9BQ87 522 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 SMOC2Q9H3U7 446 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 MAGEB16A2A368 324 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 SPECC1L-ADORA2AF8WAN1 911 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 PHGDHO43175 533 aaKnown RBP20.41■□□□□ 0.86
VPS53-201ENST00000291074 ELNP15502 786 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 CCNCP24863 283 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 CDC25CP30307 473 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 PTDSS1P48651 473 aaKnown RBP20.41■□□□□ 0.86
VPS53-201ENST00000291074 GPR15P49685 360 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 IDH3AP50213 366 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 CCNG1P51959 295 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 USP4Q13107 963 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 RCN1Q15293 331 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 MANEALQ5VSG8 457 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 ZNF598Q86UK7 904 aaKnown RBP20.41■□□□□ 0.86
VPS53-201ENST00000291074 AGR3Q8TD06 166 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 ATXN3LQ9H3M9 355 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 DCLRE1BQ9H816 532 aa20.41■□□□□ 0.86
VPS53-201ENST00000291074 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.41■□□□□ 0.86
VPS53-201ENST00000291074 FAM155AB1AL88 458 aaPredicted RBP20.4■□□□□ 0.86
VPS53-201ENST00000291074 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.4■□□□□ 0.86
VPS53-201ENST00000291074 TIMM44O43615 452 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 CACNG3O60359 315 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 DDHD2O94830 711 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 HLA-DQB2P05538 268 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 AVPR1AP37288 418 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 MAPRE1Q15691 268 aaKnown RBP20.4■□□□□ 0.86
VPS53-201ENST00000291074 BRMS1LQ5PSV4 323 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 TMPRSS6Q8IU80 811 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 POU5F2Q8N7G0 328 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 HAPLN3Q96S86 360 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 KIFC1Q9BW19 673 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 GLOD4Q9HC38 313 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 PLA2G4CQ9UP65 541 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 FNDC1Q4ZHG4 1894 aaPredicted RBP20.4■□□□□ 0.86
VPS53-201ENST00000291074 ZNF195O14628 629 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 PMPCBO75439 489 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 CYP2C18P33260 490 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 HARS2P49590 506 aaKnown RBP20.4■□□□□ 0.86
VPS53-201ENST00000291074 TUBP50607 506 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 CLNS1AP54105 237 aaKnown RBP20.4■□□□□ 0.86
VPS53-201ENST00000291074 CSE1LP55060 971 aaKnown RBP20.4■□□□□ 0.86
VPS53-201ENST00000291074 TAF11Q15544 211 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 ZNF781Q8N8C0 355 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 OR6Y1Q8NGX8 325 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 APOBEC2Q9Y235 224 aaKnown RBP20.4■□□□□ 0.86
VPS53-201ENST00000291074 MPOP05164 745 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 GABRB3P28472 473 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 INHBEP58166 350 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 ITGA7Q13683 1181 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 DENND5AQ6IQ26 1287 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 RAPH1Q70E73 1250 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 LINC00523Q86TU6 105 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 DENND6AQ8IWF6 608 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 SHKBP1Q8TBC3 707 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 SH3TC2Q8TF17 1288 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 IL12RB2Q99665 862 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 MMADHCQ9H3L0 296 aaPredicted RBP20.4■□□□□ 0.86
VPS53-201ENST00000291074 NMRAL1Q9HBL8 299 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 SLC2A6Q9UGQ3 507 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 HS3ST4Q9Y661 456 aa20.4■□□□□ 0.86
VPS53-201ENST00000291074 TK2O00142 265 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 HOXC13P31276 330 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 MXRA7P84157 204 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 MPP1Q00013 466 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 TRIM71Q2Q1W2 868 aaKnown RBP20.39■□□□□ 0.85
VPS53-201ENST00000291074 CCSAPQ6IQ19 270 aaPredicted RBP20.39■□□□□ 0.85
VPS53-201ENST00000291074 RTN4RL1Q86UN2 441 aaPredicted RBP20.39■□□□□ 0.85
VPS53-201ENST00000291074 ZC3HC1Q86WB0 502 aaKnown RBP20.39■□□□□ 0.85
VPS53-201ENST00000291074 KLHDC9Q8NEP7 349 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 DTX3LQ8TDB6 740 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 UROC1Q96N76 676 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 SIKE1Q9BRV8 207 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 THTPAQ9BU02 230 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 TRIM62Q9BVG3 475 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 SHCBP1LQ9BZQ2 653 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 AAR2Q9Y312 384 aaKnown RBP20.39■□□□□ 0.85
VPS53-201ENST00000291074 FRMPD3Q5JV73 1810 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 E9PAM4 449 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 SIN3BO75182 1162 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 VAPBO95292 243 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 PRKAR2AP13861 404 aaKnown RBP20.39■□□□□ 0.85
VPS53-201ENST00000291074 CHRNA4P43681 627 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 GLRBP48167 497 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 CTBP1Q13363 440 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 THOC5Q13769 683 aaKnown RBP20.39■□□□□ 0.85
VPS53-201ENST00000291074 ZNF460Q14592 562 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 DDR2Q16832 855 aa20.39■□□□□ 0.85
VPS53-201ENST00000291074 PDPK2PQ6A1A2 396 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms