RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TASP1Q9H6P5 420 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 COPS7BQ9H9Q2 264 aaPredicted RBP10.24□□□□□ -0.77
LIG3-201ENST00000262327 TCF7L2Q9NQB0 619 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 DNAJC28Q9NX36 388 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 VANGL2Q9ULK5 521 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 ARHGAP26Q9UNA1 814 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 I6L893 689 aaPredicted RBP10.24□□□□□ -0.77
LIG3-201ENST00000262327 EEF2KO00418 725 aaKnown RBP10.24□□□□□ -0.77
LIG3-201ENST00000262327 RECQL4O94761 1208 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 SMPD1P17405 629 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 GRK2P25098 689 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 THOP1P52888 689 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 NAGLUP54802 743 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 BTKQ06187 659 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 TLR1Q15399 786 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 IYDQ6PHW0 289 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 RPS27LQ71UM5 84 aaKnown RBP10.24□□□□□ -0.77
LIG3-201ENST00000262327 ANKRD52Q8NB46 1076 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 SLC7A14Q8TBB6 771 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 ZSCAN18Q8TBC5 510 aaPredicted RBP10.24□□□□□ -0.77
LIG3-201ENST00000262327 URGCPQ8TCY9 931 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 ACMSDQ8TDX5 336 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 CENPIQ92674 756 aaPredicted RBP10.24□□□□□ -0.77
LIG3-201ENST00000262327 RCN3Q96D15 328 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 CNBD2Q96M20 576 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 SNX25Q9H3E2 840 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 PIGVQ9NUD9 493 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 Q9Y3F1 56 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 DTNAQ9Y4J8 743 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 CITO14578 2027 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 PIK3R1P27986 724 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 HOXA11P31270 313 aaPredicted RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 GARSP41250 739 aaKnown RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 ALDH1A3P47895 512 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 HARS2P49590 506 aaKnown RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 NUMBP49757 651 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 BCAT1P54687 386 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 DEUP1Q05D60 604 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 LSM12Q3MHD2 195 aaKnown RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 OTUD1Q5VV17 481 aaPredicted RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 C9orf57Q5W0N0 161 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 AAGABQ6PD74 315 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 EPGNQ6UW88 154 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.23□□□□□ -0.77
LIG3-201ENST00000262327 ICA1LQ8NDH6 482 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 PIP4K2CQ8TBX8 421 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 NDNQ99608 321 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 RBBP8Q99708 897 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 NMRAL1Q9HBL8 299 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 PCDHB12Q9Y5F1 795 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 H3BRB1 525 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 AOC2O75106 756 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 PIGNO95427 931 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 ZNF865P0CJ78 1059 aaPredicted RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 ERCC2P18074 760 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 NELFEP18615 380 aaKnown RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 NMBRP28336 390 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 PMLP29590 882 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 SPRP35270 261 aaPredicted RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 MATKP42679 507 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 MS4A2Q01362 244 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 GRM3Q14832 879 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 FAM187BQ17R55 369 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 ZNF484Q5JVG2 852 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 ZNF280DQ6N043 979 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 NPWQ8N729 165 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 CCNYL1Q8N7R7 359 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 ZNF784Q8NCA9 323 aaPredicted RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 KCTD4Q8WVF5 259 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 TMA16Q96EY4 203 aaKnown RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 CENPKQ9BS16 269 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 TUT1Q9H6E5 874 aaKnown RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 UBAP1Q9NZ09 502 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 FLRT1Q9NZU1 646 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 ZDHHC2Q9UIJ5 367 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 SORCS3Q9UPU3 1222 aa10.23□□□□□ -0.77
LIG3-201ENST00000262327 TIMM13Q9Y5L4 95 aaPredicted RBP10.23□□□□□ -0.77
LIG3-201ENST00000262327 C15orf38-AP3S2A0A0A6YYH1 394 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 A0A1B0GTW7 788 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 NRP1O14786 923 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 TRIM13O60858 407 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 TRPA1O75762 1119 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 CYP2B6P20813 491 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 PTPN3P26045 913 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 GRIA4P48058 902 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 MTTPP55157 894 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 MAP3K7CLP57077 242 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 SOX4Q06945 474 aaPredicted RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 CDK18Q07002 472 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 ZBTB17Q13105 803 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.22□□□□□ -0.77
LIG3-201ENST00000262327 ANKRD20A4Q4UJ75 823 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 ARL13AQ5H913 290 aaPredicted RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 C4orf22Q6V702 233 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 TMC7Q7Z402 723 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 ARPINQ7Z6K5 226 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 KCNMB4Q86W47 210 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 OSTM1Q86WC4 334 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 DSELQ8IZU8 1212 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 OR6J1Q8NGC5 347 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms