RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 UGT3A1Q6NUS8 523 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 MFSD7Q6UXD7 560 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 ARCQ7LC44 396 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 ERI1Q8IV48 349 aaKnown RBP10.59□□□□□ -0.71
VCL-201ENST00000211998 COLGALT1Q8NBJ5 622 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 ELMO1Q92556 727 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 ZFP42Q96MM3 310 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 PRRG3Q9BZD7 231 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 DPY30Q9C005 99 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 MID1IP1Q9NPA3 183 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.59□□□□□ -0.711e-8■■■■□ 20.2
VCL-201ENST00000211998 MLXQ9UH92 298 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 MTF2Q9Y483 593 aaPredicted RBP10.59□□□□□ -0.71
VCL-201ENST00000211998 USP32Q8NFA0 1604 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 GPR182O15218 404 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 MSH4O15457 936 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 HOXA2O43364 376 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 NPY2RP49146 381 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 CDC16Q13042 620 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 SHROOM1Q2M3G4 852 aaPredicted RBP10.59□□□□□ -0.71
VCL-201ENST00000211998 FAM131AQ6UXB0 335 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 DNAJC14Q6Y2X3 702 aaPredicted RBP10.59□□□□□ -0.71
VCL-201ENST00000211998 HELQQ8TDG4 1101 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 BAP1Q92560 729 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 RTKNQ9BST9 563 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 POMKQ9H5K3 350 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 CCSER2Q9H7U1 834 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 DPP3Q9NY33 737 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 CLTCQ00610 1675 aaKnown RBP10.59□□□□□ -0.71
VCL-201ENST00000211998 GABBR2O75899 941 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 SERPINA1P01009 418 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 NCAM1P13591 858 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 DPEP1P16444 411 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 PGAM1P18669 254 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 CAP2P40123 477 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 TWF1Q12792 350 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 MRNIPQ6NTE8 343 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 TMEM53Q6P2H8 277 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 ZNF467Q7Z7K2 595 aaPredicted RBP10.59□□□□□ -0.71
VCL-201ENST00000211998 TARS2Q9BW92 718 aaKnown RBP10.59□□□□□ -0.71
VCL-201ENST00000211998 XPNPEP3Q9NQH7 507 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 PIH1D1Q9NWS0 290 aaKnown RBP10.59□□□□□ -0.71
VCL-201ENST00000211998 VANGL2Q9ULK5 521 aa10.59□□□□□ -0.71
VCL-201ENST00000211998 H3BN98 237 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 GEMP55040 296 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 C10orf120Q5SQS8 335 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 ADCK2Q7Z695 626 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 BHMTQ93088 406 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 GPR63Q9BZJ6 419 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 MROH8Q9H579 483 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 EMC3Q9P0I2 261 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 SLC17A7Q9P2U7 560 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 NKX1-2Q9UD57 310 aaPredicted RBP10.58□□□□□ -0.72
VCL-201ENST00000211998 ENOPH1Q9UHY7 261 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 ANKRD6Q9Y2G4 727 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 PIAS1O75925 651 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 EGFRP00533 1210 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 ITGB3P05106 788 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 ZNF806P0C7X5 589 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 IRF1P10914 325 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 AMPD1P23109 780 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 MGAT1P26572 445 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 SLC11A2P49281 568 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 DDX39BQ13838 428 aaKnown RBP10.58□□□□□ -0.72
VCL-201ENST00000211998 GIT2Q14161 759 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 SQLEQ14534 574 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 CA9Q16790 459 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 PPM1LQ5SGD2 360 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 CBWD2Q8IUF1 395 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 FAM9CQ8IZT9 166 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 MYLPFQ96A32 169 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 MECRQ9BV79 373 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 REEP1Q9H902 201 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 DIP2AQ14689 1571 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 PTPRMP28827 1452 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 ERI2A8K979 691 aaKnown RBP10.58□□□□□ -0.72
VCL-201ENST00000211998 LYPLA1O75608 230 aaPredicted RBP10.58□□□□□ -0.72
VCL-201ENST00000211998 STX4Q12846 297 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 NADK2Q4G0N4 442 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 CES3Q6UWW8 571 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 KCTD4Q8WVF5 259 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 L3MBTL3Q96JM7 780 aaPredicted RBP10.58□□□□□ -0.72
VCL-201ENST00000211998 CINPQ9BW66 212 aaPredicted RBP10.58□□□□□ -0.72
VCL-201ENST00000211998 ITGA11Q9UKX5 1188 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 MRPS7Q9Y2R9 242 aaKnown RBP10.58□□□□□ -0.72
VCL-201ENST00000211998 CEMIPQ8WUJ3 1361 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 MED24O75448 989 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 BANF1O75531 89 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 F9P00740 461 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 SLC26A2P50443 739 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 TTLL9Q3SXZ7 439 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 HERC6Q8IVU3 1022 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 OR8H3Q8N146 312 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 NXNL1Q96CM4 212 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 PPP2R3BQ9Y5P8 575 aa10.58□□□□□ -0.72
VCL-201ENST00000211998 UBE2QL1A1L167 161 aa10.57□□□□□ -0.72
VCL-201ENST00000211998 FAM92AA1XBS5 289 aa10.57□□□□□ -0.72
VCL-201ENST00000211998 GJB6O95452 261 aa10.57□□□□□ -0.72
VCL-201ENST00000211998 TOP3BO95985 862 aaKnown RBP10.57□□□□□ -0.72
VCL-201ENST00000211998 LRG1P02750 347 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms