RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 ERCC2P18074 760 aa14.28□□□□□ -0.12
USH1C-201ENST00000005226 RPS12P25398 132 aaKnown RBP14.28□□□□□ -0.12
USH1C-201ENST00000005226 NUMBP49757 651 aa14.28□□□□□ -0.12
USH1C-201ENST00000005226 ZBTB17Q13105 803 aa14.28□□□□□ -0.12
USH1C-201ENST00000005226 USP10Q14694 798 aaKnown RBP14.28□□□□□ -0.12
USH1C-201ENST00000005226 IL23RQ5VWK5 629 aa14.28□□□□□ -0.12
USH1C-201ENST00000005226 GK5Q6ZS86 529 aa14.28□□□□□ -0.12
USH1C-201ENST00000005226 TMEM135Q86UB9 458 aa14.28□□□□□ -0.12
USH1C-201ENST00000005226 NPWQ8N729 165 aa14.28□□□□□ -0.12
USH1C-201ENST00000005226 ZNF512Q96ME7 567 aaPredicted RBP14.28□□□□□ -0.12
USH1C-201ENST00000005226 SERPINI1Q99574 410 aa14.28□□□□□ -0.12
USH1C-201ENST00000005226 LIN28AQ9H9Z2 209 aaKnown RBP14.28□□□□□ -0.12
USH1C-201ENST00000005226 RAP2CQ9Y3L5 183 aa14.28□□□□□ -0.12
USH1C-201ENST00000005226 TMEM114B3SHH9 223 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 IRF6O14896 467 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 AP1G1O43747 822 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 BCAT1P54687 386 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 NAB1Q13506 487 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 SLC25A52Q3SY17 297 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 SH3D19Q5HYK7 790 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 METTL21CQ5VZV1 264 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 ZDHHC17Q8IUH5 632 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 TMIGD2Q96BF3 282 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 OTUD5Q96G74 571 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 FAM49AQ9H0Q0 323 aaPredicted RBP14.27□□□□□ -0.12
USH1C-201ENST00000005226 GTF2IRD1Q9UHL9 959 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 TLK1Q9UKI8 766 aa14.27□□□□□ -0.12
USH1C-201ENST00000005226 SSC5DA1L4H1 1573 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 CITO14578 2027 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 NEMP2A6NFY4 417 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 KCNU1A8MYU2 1149 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 MPOP05164 745 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 NFKB1P19838 968 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 ME2P23368 584 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 RPL10P27635 214 aaKnown RBP14.27□□□□□ -0.13
USH1C-201ENST00000005226 GABRB3P28472 473 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 CTBP1Q13363 440 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 DALRD3Q5D0E6 543 aaKnown RBP14.27□□□□□ -0.13
USH1C-201ENST00000005226 ARHGAP17Q68EM7 881 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 B3GNT6Q6ZMB0 384 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 STRADAQ7RTN6 431 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 FSTL5Q8N475 847 aaPredicted RBP14.27□□□□□ -0.13
USH1C-201ENST00000005226 RP9Q8TA86 221 aaKnown RBP14.27□□□□□ -0.13
USH1C-201ENST00000005226 AFG1LQ8WV93 481 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 MRPL1Q9BYD6 325 aaKnown RBP14.27□□□□□ -0.13
USH1C-201ENST00000005226 NFKBIZQ9BYH8 718 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 DRC3Q9H069 523 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 NXF3Q9H4D5 531 aaKnown RBP14.27□□□□□ -0.13
USH1C-201ENST00000005226 IGSF9Q9P2J2 1179 aa14.27□□□□□ -0.13
USH1C-201ENST00000005226 GMPR2Q9P2T1 348 aaKnown RBP14.27□□□□□ -0.13
USH1C-201ENST00000005226 PRPF19Q9UMS4 504 aaKnown RBP14.27□□□□□ -0.13
USH1C-201ENST00000005226 COPG1Q9Y678 874 aaKnown RBP14.27□□□□□ -0.13
USH1C-201ENST00000005226 DLX3O60479 287 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 AP2A1O95782 977 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 HNRNPLP14866 589 aaKnown RBP eCLIP14.26□□□□□ -0.13
USH1C-201ENST00000005226 PPARGP37231 505 aaPredicted RBP14.26□□□□□ -0.13
USH1C-201ENST00000005226 C9orf57Q5W0N0 161 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 OTOP3Q7RTS5 596 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 KDELC2Q7Z4H8 507 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 TICAM1Q8IUC6 712 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 DENND6AQ8IWF6 608 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 CELF6Q96J87 481 aaKnown RBP14.26□□□□□ -0.13
USH1C-201ENST00000005226 C1QTNF1Q9BXJ1 281 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 SENP6Q9GZR1 1112 aaPredicted RBP14.26□□□□□ -0.13
USH1C-201ENST00000005226 CACNG4Q9UBN1 327 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 ADAM28Q9UKQ2 775 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 DNAH12Q6ZR08 3092 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 C7orf72A4D263 438 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 TCAF2A6NFQ2 919 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 TOMM70O94826 608 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 STAU1O95793 577 aaKnown RBP14.26□□□□□ -0.13
USH1C-201ENST00000005226 HOXA11P31270 313 aaPredicted RBP14.26□□□□□ -0.13
USH1C-201ENST00000005226 RGS2P41220 211 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 SNX16P57768 344 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 MPP1Q00013 466 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 RALGDSQ12967 914 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 IL31Q6EBC2 164 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 LAYNQ6UX15 382 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 MOB2Q70IA6 237 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 SLC7A14Q8TBB6 771 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 PDCD6IPQ8WUM4 868 aaKnown RBP14.26□□□□□ -0.13
USH1C-201ENST00000005226 ISL2Q96A47 359 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 LENG1Q96BZ8 264 aaPredicted RBP14.26□□□□□ -0.13
USH1C-201ENST00000005226 NXNL1Q96CM4 212 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 FTHL17Q9BXU8 183 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 SNX25Q9H3E2 840 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 ELP3Q9H9T3 547 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 GALNT8Q9NY28 637 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 PHF24Q9UPV7 400 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 CDYLQ9Y232 598 aa14.26□□□□□ -0.13
USH1C-201ENST00000005226 NRP1O14786 923 aa14.25□□□□□ -0.13
USH1C-201ENST00000005226 DCLK1O15075 740 aa14.25□□□□□ -0.13
USH1C-201ENST00000005226 VAPBO95292 243 aa14.25□□□□□ -0.13
USH1C-201ENST00000005226 MT-CO1P00395 513 aa14.25□□□□□ -0.13
USH1C-201ENST00000005226 FAM58BPP0C7Q3 252 aa14.25□□□□□ -0.13
USH1C-201ENST00000005226 GRM5P41594 1212 aa14.25□□□□□ -0.13
USH1C-201ENST00000005226 DPYSQ14117 519 aa14.25□□□□□ -0.13
USH1C-201ENST00000005226 KCTD2Q14681 263 aa14.25□□□□□ -0.13
USH1C-201ENST00000005226 ZNF484Q5JVG2 852 aa14.25□□□□□ -0.13
USH1C-201ENST00000005226 LIPMQ5VYY2 423 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms