RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 C20orf96Q9NUD7 363 aaPredicted RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 PDCD11Q14690 1871 aaKnown RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 GLRA3O75311 464 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 SRGAP2BP0DMP2 458 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 BMP1P13497 986 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 PGAM1P18669 254 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 GLDCP23378 1020 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 SLC25A52Q3SY17 297 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 CYHR1Q6ZMK1 362 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 DSELQ8IZU8 1212 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 EPAS1Q99814 870 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 CDH19Q9H159 772 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 RPL26L1Q9UNX3 145 aaKnown RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 hCG_2014768A0A024R1R8 64 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 LRRC14BA6NHZ5 514 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 MSI1O43347 362 aaKnown RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 HSPA4LO95757 839 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 PIK3R1P27986 724 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 GRM5P41594 1212 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 TKTL1P51854 596 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 MYBPC1Q00872 1141 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 BEX3Q00994 111 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 SNAPC2Q13487 334 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 KCTD11Q693B1 232 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 LAYNQ6UX15 382 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 TMEM135Q86UB9 458 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 FBXW8Q8N3Y1 598 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 WNT8BQ93098 351 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 SMOQ99835 787 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 DDX18Q9NVP1 670 aaKnown RBP10.89□□□□□ -0.67
USP28-201ENST00000003302 GTF2IRD1Q9UHL9 959 aa10.89□□□□□ -0.67
USP28-201ENST00000003302 C15orf38-AP3S2A0A0A6YYH1 394 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 PIRO00625 290 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 FOXD2O60548 495 aaPredicted RBP10.88□□□□□ -0.67
USP28-201ENST00000003302 HNRNPCL1O60812 293 aaKnown RBP10.88□□□□□ -0.67
USP28-201ENST00000003302 NME5P56597 212 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 C1QTNF8P60827 252 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 ARTNQ5T4W7 220 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 ARPINQ7Z6K5 226 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 ATP6V1E2Q96A05 226 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 TMA16Q96EY4 203 aaKnown RBP10.88□□□□□ -0.67
USP28-201ENST00000003302 CNBD2Q96M20 576 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 SIK2Q9H0K1 926 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 C1orf21Q9H246 121 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 TASP1Q9H6P5 420 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 DLX3O60479 287 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 RNASEH2AO75792 299 aaKnown RBP10.88□□□□□ -0.67
USP28-201ENST00000003302 CIB2O75838 187 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 TFEBP19484 476 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 GP5P40197 560 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 CDK7P50613 346 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 LIMK2P53671 638 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 PDK3Q15120 406 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 UBXN11Q5T124 520 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 CNSTQ6PJW8 725 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 DPF3Q92784 378 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 LRRC39Q96DD0 335 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 ACE2Q9BYF1 805 aaPredicted RBP10.88□□□□□ -0.67
USP28-201ENST00000003302 NFKBIZQ9BYH8 718 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 NMRAL1Q9HBL8 299 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 XPR1Q9UBH6 696 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 MORF4L1Q9UBU8 362 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 PCDHB12Q9Y5F1 795 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 ZSWIM8A7E2V4 1837 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 A0A0U1RQS6 177 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 C7orf72A4D263 438 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 OR51F1A6NGY5 319 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 KCNU1A8MYU2 1149 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 TXNDC5Q8NBS9 432 aaKnown RBP10.88□□□□□ -0.67
USP28-201ENST00000003302 SMIM14Q96QK8 99 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 GRIP2Q9C0E4 1043 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 ZNF408Q9H9D4 720 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 TCF7L2Q9NQB0 619 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 CPA4Q9UI42 421 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 EEF2KO00418 725 aaKnown RBP10.88□□□□□ -0.67
USP28-201ENST00000003302 VILLO15195 856 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 LRIG2O94898 1065 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 PYGLP06737 847 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 PMLP29590 882 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 NSUN2Q08J23 767 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP28-201ENST00000003302 MMEL1Q495T6 779 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 LGSNQ5TDP6 509 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 NXNQ6DKJ4 435 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 CYP2R1Q6VVX0 501 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 ZBTB46Q86UZ6 589 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 KCNMB4Q86W47 210 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 CCNYL1Q8N7R7 359 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 SMG8Q8ND04 991 aaKnown RBP10.88□□□□□ -0.67
USP28-201ENST00000003302 NT5C3BQ969T7 300 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 DCUN1D1Q96GG9 259 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 KLHL4Q9C0H6 718 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 TMLHEQ9NVH6 421 aa10.88□□□□□ -0.67
USP28-201ENST00000003302 MATN2O00339 956 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 VAPBO95292 243 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 ALOX15P16050 662 aaPredicted RBP10.87□□□□□ -0.67
USP28-201ENST00000003302 YWHAQP27348 245 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 ARL4AP40617 200 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 MAGEA12P43365 314 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 BCAT1P54687 386 aa10.87□□□□□ -0.67
USP28-201ENST00000003302 DNAL1Q4LDG9 190 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms