RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TNFSF8P32971 234 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 IGHMBP2P38935 993 aaKnown RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 TM4SF4P48230 202 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CASP5P51878 434 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 DRG2P55039 364 aaKnown RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 LINC01547P58512 204 aaPredicted RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 RPS16P62249 146 aaKnown RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 ZNF543Q08ER8 600 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 SEMA5AQ13591 1074 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 POLD3Q15054 466 aaPredicted RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 PPP2R5AQ15172 486 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CNGA2Q16280 664 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ZNF284Q2VY69 593 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CCDC157Q569K6 752 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ALG10Q5BKT4 473 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ALG10BQ5I7T1 473 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 C3orf38Q5JPI3 329 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ODR4Q5SWX8 454 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 FAM90A2PQ658T7 463 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 FAAP20Q6NZ36 180 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ACSM6Q6P461 480 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 MZT2AQ6P582 158 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 SLC26A9Q7LBE3 791 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ZNF440Q8IYI8 595 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CIARTQ8N365 385 aaPredicted RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 MPP5Q8N3R9 675 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 FBXL16Q8N461 479 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 EXD3Q8N9H8 876 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ANKRD52Q8NB46 1076 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 FAM156AQ8NDB6 213 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ZNF248Q8NDW4 579 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 MBD3L2Q8NHZ7 208 aaPredicted RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 TTC8Q8TAM2 541 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 SUN3Q8TAQ9 357 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 DEPTORQ8TB45 409 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 GLMPQ8WWB7 406 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 LRTOMTQ8WZ04 291 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 TSR2Q969E8 191 aaKnown RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 TIFAQ96CG3 184 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ZNF689Q96CS4 500 aaPredicted RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 APIPQ96GX9 242 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CYYR1Q96J86 154 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 FAM227BQ96M60 508 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 LRGUKQ96M69 825 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 WDR24Q96S15 920 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 ASCL2Q99929 193 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 UNKQ9C0B0 810 aaKnown RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 BTBD1Q9H0C5 482 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CHST8Q9H2A9 424 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 KLHL31Q9H511 634 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 DDX21Q9NR30 783 aaKnown RBP eCLIP0.57□□□□□ -2.32
VPS35-212ENST00000640313 C1orf112Q9NSG2 853 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 OBP2AQ9NY56 170 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 CAMSAP3Q9P1Y5 1249 aaPredicted RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 CLIP2Q9UDT6 1046 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 MID2Q9UJV3 735 aa0.57□□□□□ -2.32
VPS35-212ENST00000640313 NOB1Q9ULX3 412 aaKnown RBP0.57□□□□□ -2.32
VPS35-212ENST00000640313 TRBV5-7A0A0A0MS05 114 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 A0A1W2PPC4 97 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 A0A1W2PS18 150 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 MEIOCA2RUB1 952 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 LILRA5A6NI73 299 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 VSTM5A8MXK1 200 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 MCIDASD6RGH6 385 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 PYCARD-AS1I3L0S3 204 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 M0QZQ0 153 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 PCDH17O14917 1159 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 CTNND1O60716 968 aaKnown RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 CNTN5O94779 1100 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 IL18RAPO95256 599 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 AFPP02771 609 aaKnown RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 MT-ND5P03915 603 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 S100BP04271 92 aaPredicted RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 TUBBP07437 444 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 MYZAPP0CAP1 466 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 GATA1P15976 413 aaPredicted RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 BTF3P20290 206 aaKnown RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 KCNA5P22460 613 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 MST1P26927 711 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 PEX2P28328 305 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 GABRB3P28472 473 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 C21orf33P30042 268 aaPredicted RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 SLC7A1P30825 629 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 AVPR1AP37288 418 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 THPOP40225 353 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 PBX1P40424 430 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 PIK3CBP42338 1070 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 CARSP49589 748 aaKnown RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 CPT1AP50416 773 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 ITGA8P53708 1063 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 SUMO3P55854 103 aaPredicted RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 SLC8A3P57103 927 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 ANAPC15P60006 121 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 TUBB4BP68371 445 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 FAM193AP78312 1265 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 IGBP1P78318 339 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 DLK1P80370 383 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 ZBTB16Q05516 673 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 SREBF2Q12772 1141 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 STK3Q13188 491 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms