RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 IGFN1Q86VF2 1251 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 CAMK1DQ8IU85 385 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 FAM185AQ8N0U4 392 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 CLIP4Q8N3C7 705 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 SCAMP5Q8TAC9 235 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 BICD2Q8TD16 824 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 EID2BQ96D98 161 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 ABHD16BQ9H3Z7 469 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 KLHL31Q9H511 634 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 ACTR5Q9H9F9 607 aaPredicted RBP4.53□□□□□ -1.68
CD44-239ENST00000639002 PDE11AQ9HCR9 933 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 SEPSECSQ9HD40 501 aaKnown RBP4.53□□□□□ -1.68
CD44-239ENST00000639002 DAPP1Q9UN19 280 aa4.53□□□□□ -1.68
CD44-239ENST00000639002 A0A087WYN8 130 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 A0A1B0GUV1 79 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 NPIPB13A6NJU9 1138 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 NPIPB5A8MRT5 1133 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 NPIPB4C9JG80 1138 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 GRM8O00222 908 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 LYL1P12980 280 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 UNGP13051 313 aaPredicted RBP4.52□□□□□ -1.69
CD44-239ENST00000639002 PKMP14618 531 aaKnown RBP4.52□□□□□ -1.69
CD44-239ENST00000639002 ZNF12P17014 697 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 GNLYP22749 145 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 MT3P25713 68 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 TYK2P29597 1187 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 TECP42680 631 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 RRP1P56182 461 aaKnown RBP4.52□□□□□ -1.69
CD44-239ENST00000639002 CDK18Q07002 472 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 GALNT1Q10472 559 aaPredicted RBP4.52□□□□□ -1.69
CD44-239ENST00000639002 KIF5AQ12840 1032 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 TRAF3Q13114 568 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 STARD3Q14849 445 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 CCDC181Q5TID7 509 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 XRRA1Q6P2D8 792 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 GGT6Q6P531 493 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.52□□□□□ -1.69
CD44-239ENST00000639002 USP43Q70EL4 1123 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 ARMC9Q7Z3E5 817 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 FAM186BQ8IYM0 893 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 WFIKKN2Q8TEU8 576 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 DNASE2BQ8WZ79 361 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 TNIP3Q96KP6 325 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 KATNAL1Q9BW62 490 aa4.52□□□□□ -1.69
CD44-239ENST00000639002 A0A0A0MQY5 61 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 MS4A18H0YCH9 400 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 FFAR2O15552 330 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 LDB2O43679 373 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 LIASO43766 372 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 AVPR1AP37288 418 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 THPOP40225 353 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 KCNJ4P48050 445 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 DCTN1Q14203 1278 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 ZNF284Q2VY69 593 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 GALNTL6Q49A17 601 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 TTC22Q5TAA0 569 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 FAM171A1Q5VUB5 890 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 C16orf82Q7Z2V1 217 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 CUZD1Q86UP6 607 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 DPP10Q8N608 796 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 SLC2A12Q8TD20 617 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 C2CD4CQ8TF44 421 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 RTKNQ9BST9 563 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 TM6SF1Q9BZW5 370 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 C6orf106Q9H6K1 298 aaPredicted RBP4.51□□□□□ -1.69
CD44-239ENST00000639002 CATSPERBQ9H7T0 1116 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 ZNF556Q9HAH1 456 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 CHST12Q9NRB3 414 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 MST1RQ04912 1400 aa4.51□□□□□ -1.69
CD44-239ENST00000639002 KRT86O43790 486 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 SOX30O94993 753 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 ZBTB11O95625 1053 aaPredicted RBP4.5□□□□□ -1.69
CD44-239ENST00000639002 KRT18P05783 430 aaKnown RBP4.5□□□□□ -1.69
CD44-239ENST00000639002 MYL1P05976 194 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 ITGB8P26012 769 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 PDIA3P30101 505 aaKnown RBP4.5□□□□□ -1.69
CD44-239ENST00000639002 CYP2J2P51589 502 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 RPL36AP83881 106 aaKnown RBP4.5□□□□□ -1.69
CD44-239ENST00000639002 KRT81Q14533 505 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 PFKFB4Q16877 469 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 TBRG1Q3YBR2 411 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 TDRD12Q587J7 1177 aaKnown RBP4.5□□□□□ -1.69
CD44-239ENST00000639002 FSCBQ5H9T9 825 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 NFRKBQ6P4R8 1299 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 TRIM74Q86UV6 250 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 TRIM73Q86UV7 250 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 NR2C2APQ86WQ0 139 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 SLC44A2Q8IWA5 706 aaPredicted RBP4.5□□□□□ -1.69
CD44-239ENST00000639002 VPS52Q8N1B4 723 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 HORMAD2Q8N7B1 307 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 CEP76Q8TAP6 659 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 CDT1Q9H211 546 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 VPS33BQ9H267 617 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 NLRC4Q9NPP4 1024 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 PRDM8Q9NQV8 689 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 MDFICQ9P1T7 246 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 RAP2CQ9Y3L5 183 aa4.5□□□□□ -1.69
CD44-239ENST00000639002 A0A087WV62 115 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 EFCAB8A8MWE9 144 aa4.49□□□□□ -1.69
CD44-239ENST00000639002 HSPB6O14558 160 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms