RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	KLHL8	Q9P2G9	620 aa	Predicted RBP	12.03	□□□□□ -0.48
CLN6-223	ENST00000637823	IGSF9	Q9P2J2	1179 aa		12.03	□□□□□ -0.48
CLN6-223	ENST00000637823	MTCH2	Q9Y6C9	303 aa		12.03	□□□□□ -0.48
CLN6-223	ENST00000637823	MIA3	Q5JRA6	1907 aa		12.03	□□□□□ -0.48
CLN6-223	ENST00000637823		H0Y626	953 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823		J3KR12	359 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	SCAMP3	O14828	347 aa	Known RBP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	ZBTB24	O43167	697 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	PSMD3	O43242	534 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	KDELR3	O43731	214 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	PRAMEF11	O60813	436 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	PPFIA2	O75334	1257 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	METTL18	O95568	372 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	TPSB2	P20231	275 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	ACVRL1	P37023	503 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	OXCT1	P55809	520 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	CDK16	Q00536	496 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	DHX9	Q08211	1270 aa	Known RBP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	SEMA5A	Q13591	1074 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	KCNJ11	Q14654	390 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	GRIN2C	Q14957	1233 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	TPSAB1	Q15661	275 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	CTC1	Q2NKJ3	1217 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	SPDYC	Q5MJ68	293 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	RNF219	Q5W0B1	726 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	RNF43	Q68DV7	783 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	CXorf57	Q6NSI4	855 aa	Known RBP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	PPP1R21	Q6ZMI0	780 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	TMC3	Q7Z5M5	1100 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	ZNF354C	Q86Y25	554 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	CCDC117	Q8IWD4	279 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	NPAS3	Q8IXF0	933 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	CARNMT1	Q8N4J0	409 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	TAB3	Q8N5C8	712 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	FGF13	Q92913	245 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	SMARCD2	Q92925	531 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	GDAP1L1	Q96MZ0	367 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	ASB16	Q96NS5	453 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	PPP1R2P1	Q96PQ5	205 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	FUT8	Q9BYC5	575 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	TXLNGY	Q9BZA5	131 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	S1PR5	Q9H228	398 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	TTYH1	Q9H313	450 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	SP110	Q9HB58	689 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	TRPV4	Q9HBA0	871 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	RBM22	Q9NW64	420 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	ZNF446	Q9NWS9	450 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	OBP2A	Q9NY56	170 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	CLEC1B	Q9P126	229 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	HPCAL4	Q9UM19	191 aa		12.02	□□□□□ -0.49
CLN6-223	ENST00000637823	COLQ	Q9Y215	455 aa	Predicted RBP	12.02	□□□□□ -0.49
CLN6-223	ENST00000637823		A0A0D9SEW6	157 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823		E7EVH7	732 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	NEBL	O76041	1014 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	PEX11B	O96011	259 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	MTHFR	P42898	656 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	IFNAR2	P48551	515 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	PMS2	P54278	862 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	SARNP	P82979	210 aa	Known RBP	12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	TNK2	Q07912	1038 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	ZBTB17	Q13105	803 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	CBLB	Q13191	982 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	PRPSAP1	Q14558	356 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	CASP8	Q14790	479 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	FAM78A	Q5JUQ0	283 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	TMCO4	Q5TGY1	634 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	MARC1	Q5VT66	337 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	ANKRD22	Q5VYY1	191 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	IL31	Q6EBC2	164 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	TPGS1	Q6ZTW0	290 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	ADGRG2	Q8IZP9	1017 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	TEX26	Q8N6G2	289 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	CNTD1	Q8N815	330 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	MCU	Q8NE86	351 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	FIBIN	Q8TAL6	211 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	RIN3	Q8TB24	985 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	IRF7	Q92985	503 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	E2F7	Q96AV8	911 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	RIPOR3	Q96MK2	946 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	AGAP3	Q96P47	875 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	FEM1A	Q9BSK4	669 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	SPON2	Q9BUD6	331 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	ACE2	Q9BYF1	805 aa	Predicted RBP	12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	CEP41	Q9BYV8	373 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	PHACTR1	Q9C0D0	580 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	GBA3	Q9H227	469 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	LINC00597	Q9H2U6	94 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	VIPAS39	Q9H9C1	493 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	GLOD4	Q9HC38	313 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	EIF2B3	Q9NR50	452 aa	Known RBP	12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	RSPH14	Q9UHP6	348 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	DENND4A	Q7Z401	1863 aa		12.01	□□□□□ -0.49
CLN6-223	ENST00000637823	KIF26A	Q9ULI4	1882 aa	Predicted RBP	12	□□□□□ -0.49
CLN6-223	ENST00000637823	ANKRD36	A6QL64	1941 aa		12	□□□□□ -0.49
CLN6-223	ENST00000637823	TCRBV7S3A2	A0A539	114 aa		12	□□□□□ -0.49
CLN6-223	ENST00000637823	GOLGA6C	A6NDK9	693 aa		12	□□□□□ -0.49
CLN6-223	ENST00000637823	GOLGA6B	A6NDN3	693 aa		12	□□□□□ -0.49
CLN6-223	ENST00000637823	ERI2	A8K979	691 aa	Known RBP	12	□□□□□ -0.49
CLN6-223	ENST00000637823	MAP2K7	O14733	419 aa		12	□□□□□ -0.49
CLN6-223	ENST00000637823	EIF3H	O15372	352 aa	Known RBP eCLIP	12	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms