RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RPRD1AQ96P16 312 aaPredicted RBP19.95■□□□□ 0.78
CLN3-262ENST00000637699 MED15Q96RN5 788 aa19.95■□□□□ 0.78
CLN3-262ENST00000637699 ASH1LQ9NR48 2969 aaKnown RBP19.95■□□□□ 0.78
CLN3-262ENST00000637699 MCF2LO15068 1137 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 FFAR2O15552 330 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 ATP9BO43861 1147 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 RNGTTO60942 597 aaKnown RBP19.94■□□□□ 0.78
CLN3-262ENST00000637699 CD44P16070 742 aaKnown RBP19.94■□□□□ 0.78
CLN3-262ENST00000637699 PRLRP16471 622 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 TAS2R38P59533 333 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 CDK17Q00537 523 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 EIF4EBP2Q13542 120 aaPredicted RBP19.94■□□□□ 0.78
CLN3-262ENST00000637699 HS1BP3Q53T59 392 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 TMEM110Q86TL2 294 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 ERICH1Q86X53 443 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 SPACA3Q8IXA5 215 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 LSM14AQ8ND56 463 aaKnown RBP19.94■□□□□ 0.78
CLN3-262ENST00000637699 ZNF606Q8WXB4 792 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 NAF1Q96HR8 494 aaKnown RBP19.94■□□□□ 0.78
CLN3-262ENST00000637699 DHTKD1Q96HY7 919 aaPredicted RBP19.94■□□□□ 0.78
CLN3-262ENST00000637699 PPP1R9BQ96SB3 815 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 FEM1AQ9BSK4 669 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 CAAP1Q9H8G2 361 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 UCKL1Q9NWZ5 548 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 DDIT4Q9NX09 232 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 CNTN6Q9UQ52 1028 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 PCDHB1Q9Y5F3 818 aa19.94■□□□□ 0.78
CLN3-262ENST00000637699 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.93■□□□□ 0.78
CLN3-262ENST00000637699 TEX51A0A1B0GUA7 166 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 THAP12O43422 761 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 MED7O43513 233 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 THEGLP0DJG4 465 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 SLC2A3P11169 496 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 DGKAP23743 735 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 CCR1P32246 355 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 VASPP50552 380 aaPredicted RBP19.93■□□□□ 0.78
CLN3-262ENST00000637699 IRAK1P51617 712 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 KCNMA1Q12791 1236 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 KCNH2Q12809 1159 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 ZNF177Q13360 481 aaPredicted RBP19.93■□□□□ 0.78
CLN3-262ENST00000637699 KLHL10Q6JEL2 608 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 TMC6Q7Z403 805 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 ZNF605Q86T29 641 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 DEFB106AQ8N104 65 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 ZNF843Q8N446 348 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 LGMNQ99538 433 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 GTPBP4Q9BZE4 634 aaKnown RBP19.93■□□□□ 0.78
CLN3-262ENST00000637699 INTS2Q9H0H0 1204 aaKnown RBP19.93■□□□□ 0.78
CLN3-262ENST00000637699 PREBQ9HCU5 417 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 UBE2TQ9NPD8 197 aaPredicted RBP19.93■□□□□ 0.78
CLN3-262ENST00000637699 ACP6Q9NPH0 428 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 VPS28Q9UK41 221 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 VANGL2Q9ULK5 521 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 ZNF462Q96JM2 2506 aa19.93■□□□□ 0.78
CLN3-262ENST00000637699 ATMQ13315 3056 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 TDRD6O60522 2096 aaKnown RBP19.92■□□□□ 0.78
CLN3-262ENST00000637699 A0A1W2PQU0 124 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 GOLGA6L4A6NEF3 574 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 ALOX15BO15296 676 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 PLA2G2AP14555 144 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 GGCXP38435 758 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 PDCLQ13371 301 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 AUHQ13825 339 aaKnown RBP19.92■□□□□ 0.78
CLN3-262ENST00000637699 SH2D3CQ8N5H7 860 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 OR4C6Q8NH72 309 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 FZD3Q9NPG1 666 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 KLHL11Q9NVR0 708 aa19.92■□□□□ 0.78
CLN3-262ENST00000637699 GRAP2O75791 330 aa19.91■□□□□ 0.78
CLN3-262ENST00000637699 MPOP05164 745 aa19.91■□□□□ 0.78
CLN3-262ENST00000637699 MYF5P13349 255 aa19.91■□□□□ 0.78
CLN3-262ENST00000637699 GNA15P30679 374 aa19.91■□□□□ 0.78
CLN3-262ENST00000637699 PIP5KL1Q5T9C9 394 aa19.91■□□□□ 0.78
CLN3-262ENST00000637699 TTI2Q6NXR4 508 aa19.91■□□□□ 0.78
CLN3-262ENST00000637699 TMEM145Q8NBT3 493 aa19.91■□□□□ 0.78
CLN3-262ENST00000637699 CALN1Q9BXU9 219 aa19.91■□□□□ 0.78
CLN3-262ENST00000637699 OR51B4Q9Y5P0 310 aa19.91■□□□□ 0.78
CLN3-262ENST00000637699 KPNA3O00505 521 aaPredicted RBP19.9■□□□□ 0.78
CLN3-262ENST00000637699 OPA1O60313 960 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 MT-CO1P00395 513 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 CTSLP07711 333 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 CLDN2P57739 230 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 NME3Q13232 169 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 MEA1Q16626 185 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 PCSK4Q6UW60 755 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 C14orf80Q86SX3 495 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 TRIM59Q8IWR1 403 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 ATP11CQ8NB49 1132 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 ZNF248Q8NDW4 579 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 OR13H1Q8NG92 308 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 NELFBQ8WX92 580 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 SLC2A13Q96QE2 648 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 MUC3BQ9H195 1237 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 HOOK1Q9UJC3 728 aaKnown RBP19.9■□□□□ 0.78
CLN3-262ENST00000637699 MAN1B1Q9UKM7 699 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 FARP1Q9Y4F1 1045 aaPredicted RBP19.9■□□□□ 0.78
CLN3-262ENST00000637699 HS3ST4Q9Y661 456 aa19.9■□□□□ 0.78
CLN3-262ENST00000637699 PIAS2O75928 621 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 AFPP02771 609 aaKnown RBP19.89■□□□□ 0.77
CLN3-262ENST00000637699 GIMD1P0DJR0 217 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 CKMT1AP12532 417 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms