RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PLAAQ9Y263 795 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 CSNK1G3Q9Y6M4 447 aa14.98□□□□□ -0.01
CLN3-249ENST00000636685 AQP9O43315 295 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 CSF2P04141 144 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 NME1P15531 152 aaKnown RBP14.97□□□□□ -0.01
CLN3-249ENST00000636685 NNMTP40261 264 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 CEBPZQ03701 1054 aaKnown RBP14.97□□□□□ -0.01
CLN3-249ENST00000636685 DCAF6Q58WW2 860 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 C1orf220Q5T0J3 134 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 PIP5KL1Q5T9C9 394 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 NUGGCQ68CJ6 796 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 HORMAD1Q86X24 394 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 ZFAND4Q86XD8 727 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 UNC45BQ8IWX7 931 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 ANKRD52Q8NB46 1076 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 SLC4A11Q8NBS3 891 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 LMX1AQ8TE12 382 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 IPO9Q96P70 1041 aaKnown RBP14.97□□□□□ -0.01
CLN3-249ENST00000636685 NIF3L1Q9GZT8 377 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 ADNPQ9H2P0 1102 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 LRRC4Q9HBW1 653 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 ABCC13Q9NSE7 274 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 KBTBD4Q9NVX7 518 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 SEPT10Q9P0V9 454 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 PISDQ9UG56 409 aa14.97□□□□□ -0.01
CLN3-249ENST00000636685 A6NNZ2 444 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 C1QTNF3-AMACRE9PGA6 284 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 H3BM21 787 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 NTN3O00634 580 aaPredicted RBP14.96□□□□□ -0.01
CLN3-249ENST00000636685 TBX4P57082 545 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 C1QBPQ07021 282 aaKnown RBP14.96□□□□□ -0.01
CLN3-249ENST00000636685 KCNAB2Q13303 367 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 KNOP1Q1ED39 458 aaKnown RBP14.96□□□□□ -0.01
CLN3-249ENST00000636685 MS4A13Q5J8X5 152 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 MSANTD2Q6P1R3 559 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 SLC35F3Q8IY50 421 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 WDR48Q8TAF3 677 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 TAS1R2Q8TE23 839 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 AZIN2Q96A70 460 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 PPP1R13BQ96KQ4 1090 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 BMFQ96LC9 184 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 IL12RB2Q99665 862 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 DDX50Q9BQ39 737 aaKnown RBP14.96□□□□□ -0.01
CLN3-249ENST00000636685 BACH2Q9BYV9 841 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 FOXP3Q9BZS1 431 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 IMPG2Q9BZV3 1241 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 LRRC27Q9C0I9 530 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 DNAI2Q9GZS0 605 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 SLC39A2Q9NP94 309 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 GPR27Q9NS67 375 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 DMAC2Q9NW81 257 aa14.96□□□□□ -0.01
CLN3-249ENST00000636685 ZFR2Q9UPR6 939 aaKnown RBP14.96□□□□□ -0.01
CLN3-249ENST00000636685 POM121BA6NF01 834 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 AGRPO00253 132 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 XPO1O14980 1071 aaKnown RBP14.95□□□□□ -0.02
CLN3-249ENST00000636685 ZNF18P17022 549 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 RAD23BP54727 409 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 POLE2P56282 527 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 SLC8A3P57103 927 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 EIF3IQ13347 325 aaKnown RBP14.95□□□□□ -0.02
CLN3-249ENST00000636685 GOLGA7BQ2TAP0 167 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 ACCSLQ4AC99 568 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 ERICH6BQ5W0A0 696 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 SEL1L3Q68CR1 1132 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 ARHGAP17Q68EM7 881 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 DCP2Q8IU60 420 aaKnown RBP14.95□□□□□ -0.02
CLN3-249ENST00000636685 TMC2Q8TDI7 906 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 NAT6Q93015 286 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 BOCQ9BWV1 1114 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 ANAPC2Q9UJX6 822 aa14.95□□□□□ -0.02
CLN3-249ENST00000636685 RP1L1Q8IWN7 2480 aaPredicted RBP14.94□□□□□ -0.02
CLN3-249ENST00000636685 PRAMEF33A0A0G2JMD5 474 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 SPTY2D1-AS1A0A0U1RR47 76 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 RIOK3O14730 519 aaKnown RBP14.94□□□□□ -0.02
CLN3-249ENST00000636685 TPP1O14773 563 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 NVLO15381 856 aaKnown RBP14.94□□□□□ -0.02
CLN3-249ENST00000636685 BNIP3LO60238 219 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 PRAMEF10O60809 474 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 JMJD7P0C870 316 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 PDGFRAP16234 1089 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 JUNDP17535 347 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 CASP1P29466 404 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 RPIAP49247 311 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 DAOAP59103 153 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 TPRG1LQ5T0D9 272 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 NEK5Q6P3R8 708 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 BORAQ6PGQ7 559 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 Q6ZVU0 165 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 PARGQ86W56 976 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 LGI2Q8N0V4 545 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 SIX6OS1Q8N1H7 587 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 FCRL2Q96LA5 508 aaPredicted RBP14.94□□□□□ -0.02
CLN3-249ENST00000636685 STRADBQ9C0K7 418 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 TCEAL2Q9H3H9 227 aaPredicted RBP14.94□□□□□ -0.02
CLN3-249ENST00000636685 FOXJ2Q9P0K8 574 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 HS3ST3A1Q9Y663 406 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 SDK2Q58EX2 2172 aa14.94□□□□□ -0.02
CLN3-249ENST00000636685 IKBKBO14920 756 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 MCF2LO15068 1137 aa14.93□□□□□ -0.02
CLN3-249ENST00000636685 RAD51BO15315 384 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms