RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ART1P52961 327 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 WDR5P61964 334 aaKnown RBP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 RAE1P78406 368 aaKnown RBP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 TIAL1Q01085 375 aaKnown RBP eCLIP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 CFHR3Q02985 330 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 BTKQ06187 659 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 NSUN2Q08J23 767 aaKnown RBP eCLIP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 CHAF1AQ13111 956 aaPredicted RBP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 TRIM14Q14142 442 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 RAB30Q15771 203 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 TIGD6Q17RP2 521 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 SLC35G1Q2M3R5 365 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 SLC4A8Q2Y0W8 1093 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 ZNF718Q3SXZ3 478 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 ANXA2RQ3ZCQ2 193 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 WASHC2DQ5SRD0 308 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 TMEM63BQ5T3F8 832 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 IZUMO3Q5VZ72 239 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 TBC1D3GQ6DHY5 549 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 TBC1D3CQ6IPX1 549 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 GRHL2Q6ISB3 625 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 CCDC144NLQ6NUI1 221 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 XRRA1Q6P2D8 792 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 PGBD2Q6P3X8 592 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 USP17L6PQ6QN14 398 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 KLHL17Q6TDP4 642 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 PRSS57Q6UWY2 283 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 GATAD2AQ86YP4 633 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 TBC1D3Q8IZP1 549 aaPredicted RBP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 PNPLA1Q8N8W4 532 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 MBD3L2Q8NHZ7 208 aaPredicted RBP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 SUN3Q8TAQ9 357 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 IPO4Q8TEX9 1081 aaKnown RBP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 WDR60Q8WVS4 1066 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 HMGB4Q8WW32 186 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 BRI3BPQ8WY22 251 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 LPAR1Q92633 364 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 AKAP1Q92667 903 aaKnown RBP eCLIP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 KAT2BQ92831 832 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 CTHRC1Q96CG8 243 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 WDYHV1Q96HA8 205 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 PRR11Q96HE9 360 aaPredicted RBP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 REXO5Q96IC2 774 aaKnown RBP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 FAR2Q96K12 515 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 FAM227BQ96M60 508 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 INPP4AQ96PE3 977 aaPredicted RBP1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 FCRL5Q96RD9 977 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 PAGR1Q9BTK6 254 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 ABHD14AQ9BUJ0 271 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 TM6SF1Q9BZW5 370 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 SPRY4Q9C004 299 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 CDT1Q9H211 546 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 CCDC134Q9H6E4 229 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 RETREG1Q9H6L5 497 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 AAMDCQ9H7C9 122 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 ZNF556Q9HAH1 456 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 SAP30LQ9HAJ7 183 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 MLXIPLQ9NP71 852 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 FZD3Q9NPG1 666 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 ASNSD1Q9NWL6 643 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 FNIP2Q9P278 1114 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 RAB21Q9UL25 225 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 PCDHB7Q9Y5E2 793 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 A0A1B0GUL6 1792 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 DLEC1Q9Y238 1755 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 LY75O60449 1722 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 WDR90Q96KV7 1748 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 NHSQ6T4R5 1651 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 USP54Q70EL1 1684 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 TRPM2O94759 1503 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 CPS1P31327 1500 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 MYH13Q9UKX3 1938 aa1.25□□□□□ -2.21
SMARCB1-209ENST00000635578 A2ML1A8K2U0 1454 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 A2MP01023 1474 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 PZPP20742 1482 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 NCOA2Q15596 1464 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 CCDC141Q6ZP82 1450 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 MAGI2Q86UL8 1455 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 MLH3Q9UHC1 1453 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 ANKRD31Q8N7Z5 1873 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 TROQ12816 1431 aaPredicted RBP1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 SCAPERQ9BY12 1400 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 AFDNP55196 1824 aaKnown RBP1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 LAMB4A4D0S4 1761 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 LAMB2P55268 1798 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 SCN11AQ9UI33 1791 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 ZNF335Q9H4Z2 1342 aaPredicted RBP1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 SCN7AQ01118 1682 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 FAM208AQ9UK61 1670 aaKnown RBP1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 A0A087WZ62 844 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 TRBV5-3A0A0A0MS03 114 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 A0A0G2JK05 382 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 CCDC194A0A1B0GVG4 234 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 A0A1B0GVY2 172 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 A0A1W2PPC4 97 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 DENND3A2RUS2 1198 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 PRR23AA6NEV1 266 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 HMX3A6NHT5 357 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 AQP12BA6NM10 295 aa1.24□□□□□ -2.21
SMARCB1-209ENST00000635578 A6NNC1 897 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms