RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 VPS51Q9UID3 782 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 PCDHA3Q9Y5H8 950 aa19.56■□□□□ 0.72
SQSTM1-216ENST00000626660 SGK1O00141 431 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 SNAP91O60641 907 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 ZRANB2O95218 330 aaKnown RBP eCLIP19.55■□□□□ 0.721e-11■■□□□ 13.3
SQSTM1-216ENST00000626660 FTCDO95954 541 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 HOXB2P14652 356 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 IL4RP24394 825 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 ACVRL1P37023 503 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 CETN2P41208 172 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 IL12RB1P42701 662 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 STARD3Q14849 445 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 PTPRNQ16849 979 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 CCDC50Q8IVM0 306 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 RCOR2Q8IZ40 523 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 EXD1Q8NHP7 514 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 PCDH19Q8TAB3 1148 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 KRT35Q92764 455 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 FAF2Q96CS3 445 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 CELF6Q96J87 481 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 RNF157Q96PX1 679 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 ACE2Q9BYF1 805 aaPredicted RBP19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 NOL6Q9H6R4 1146 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 PRDM16Q9HAZ2 1276 aa19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 MUC22E2RYF6 1773 aaPredicted RBP19.55■□□□□ 0.72
SQSTM1-216ENST00000626660 ZSCAN5CA6NGD5 496 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 ZBTB24O43167 697 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 SYNCRIPO60506 623 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 ADAM23O75077 832 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 EPHX1P07099 455 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 MARCKSL1P49006 195 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 DGKEP52429 567 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 RWDD2BP57060 319 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 GEMIN4P57678 1058 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 SATB1Q01826 763 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 SLC20A2Q08357 652 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 ENPP2Q13822 863 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 TRIM58Q8NG06 486 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 HMCESQ96FZ2 354 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 RPL10LQ96L21 214 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 MRGPRX3Q96LB0 322 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 GABRG3Q99928 467 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 LRRC19Q9H756 370 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 POLMQ9NP87 494 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 ETNK2Q9NVF9 386 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 SUN2Q9UH99 717 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 CKAP5Q14008 2032 aa19.54■□□□□ 0.72
SQSTM1-216ENST00000626660 C3orf70A6NLC5 250 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 WASH3PC4AMC7 463 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 DFFAO00273 331 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 GALR2O43603 387 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 KDELR3O43731 214 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 PAPSS2O95340 614 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 ZFXP17010 805 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 STK19P49842 368 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 VASPP50552 380 aaPredicted RBP19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 SERINC3Q13530 473 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 CRY1Q16526 586 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 AFMIDQ63HM1 303 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 MFSD7Q6UXD7 560 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 SPOCD1Q6ZMY3 1216 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 RFX6Q8HWS3 928 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 NPWQ8N729 165 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 ATP11CQ8NB49 1132 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 TSTD1Q8NFU3 115 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 SLC39A8Q9C0K1 460 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 KLC2Q9H0B6 622 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 TMEM245Q9H330 911 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 SLCO3A1Q9UIG8 710 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 HS3ST2Q9Y278 367 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 MFHAS1Q9Y4C4 1052 aa19.53■□□□□ 0.72
SQSTM1-216ENST00000626660 CXorf51AA0A1B0GTR3 108 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 GOLGA6L9A6NEM1 432 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 APOL1O14791 398 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 ZMPSTE24O75844 475 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 ALDH1A2O94788 518 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 HLA-EP13747 358 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 GLDCP23378 1020 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 PRKCHP24723 683 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 PAPOLAP51003 745 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 CLCN6P51797 869 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 COPS2P61201 443 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 TFDP2Q14188 446 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 PAFAH1B3Q15102 231 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 ACCSLQ4AC99 568 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 TFDP3Q5H9I0 405 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 LINGO4Q6UY18 593 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 ARHGAP12Q8IWW6 846 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 REXO1L1PQ8IX06 675 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 SH2D3CQ8N5H7 860 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 PRRX2Q99811 253 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 PRMT8Q9NR22 394 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 POLR3BQ9NW08 1133 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 C2orf42Q9NWW7 574 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 TRMT1Q9NXH9 659 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 FBXO4Q9UKT5 387 aa19.52■□□□□ 0.72
SQSTM1-216ENST00000626660 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.52■□□□□ 0.723e-8■□□□□ 10.4
SQSTM1-216ENST00000626660 EDDM13A0A1B0GTR0 161 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 TTC34A8MYJ7 566 aa19.51■□□□□ 0.71
SQSTM1-216ENST00000626660 ATP9BO43861 1147 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms