RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 CDC73Q6P1J9 531 aa9.05□□□□□ -0.96
VCL-206ENST00000623461 NCCRP1Q6ZVX7 275 aaPredicted RBP9.05□□□□□ -0.96
VCL-206ENST00000623461 SPATA2LQ8IUW3 424 aaPredicted RBP9.05□□□□□ -0.96
VCL-206ENST00000623461 FBXO39Q8N4B4 442 aa9.05□□□□□ -0.96
VCL-206ENST00000623461 GPRASP2Q96D09 838 aa9.05□□□□□ -0.96
VCL-206ENST00000623461 SPASTQ9UBP0 616 aa9.05□□□□□ -0.96
VCL-206ENST00000623461 FAM208AQ9UK61 1670 aaKnown RBP9.05□□□□□ -0.96
VCL-206ENST00000623461 BNIP3LO60238 219 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 H6PDO95479 791 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 ATP5F1P24539 256 aaPredicted RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 LGALS3BPQ08380 585 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CCDC157Q569K6 752 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 RBM20Q5T481 1227 aaKnown RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 NIPAL1Q6NVV3 410 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 PIWIL4Q7Z3Z4 852 aaKnown RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 NARS2Q96I59 477 aaKnown RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 FICDQ9BVA6 458 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 GPATCH2LQ9NWQ4 482 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CLN6Q9NWW5 311 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 TAS2R14Q9NYV8 317 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 RPS6KA6Q9UK32 745 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 DAGLAQ9Y4D2 1042 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 LOC110117498-PIK3R3F6TDL0 507 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SYNCRIPO60506 623 aaKnown RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 AVILO75366 819 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CDK9P50750 372 aaKnown RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 CCNG1P51959 295 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CDC42P60953 191 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 ADGRE1Q14246 886 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 ZIK1Q3SY52 487 aaPredicted RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 EPHX4Q8IUS5 362 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 BTN2A2Q8WVV5 523 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 VAT1Q99536 393 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 MAGEE1Q9HCI5 957 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SLC17A7Q9P2U7 560 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 ATP6V1HQ9UI12 483 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 TMCC2O75069 709 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 GH1P01241 217 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 ITGB3P05106 788 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 PTGS2P35354 604 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 GRIA4P48058 902 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 HIRAP54198 1017 aaPredicted RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 CACNB3P54284 484 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 AQP4P55087 323 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SLC1A5Q15758 541 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 FAM71AQ8IYT1 594 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CNTD1Q8N815 330 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 C12orf50Q8NA57 414 aaPredicted RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 TDRD3Q9H7E2 651 aaKnown RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 FETUBQ9UGM5 382 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 DOLKQ9UPQ8 538 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 TBC1D30Q9Y2I9 924 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 RNF225M0QZC1 329 aaPredicted RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 CRTAMO95727 393 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SLC2A3P11169 496 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SLC5A3P53794 718 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 BCAT1P54687 386 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 RIPPLY1Q0D2K3 151 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 FAM187BQ17R55 369 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 ZSWIM7Q19AV6 140 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 ACSBG2Q5FVE4 666 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 ADGRD1Q6QNK2 874 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 HPS6Q86YV9 775 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 LRRC71Q8N4P6 559 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SLC44A1Q8WWI5 657 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 PIK3R3Q92569 461 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 MTMR9Q96QG7 549 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CITED4Q96RK1 184 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SMARCAD1Q9H4L7 1026 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 UMPSP11172 480 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 NCAM1P13591 858 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 NNMTP40261 264 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 GPSM2P81274 684 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 TSC22D1Q15714 1073 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CBWD6Q4V339 395 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CBWD3Q5JTY5 395 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CBWD5Q5RIA9 395 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 THAP5Q7Z6K1 395 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 C12orf56Q8IXR9 622 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 C4orf19Q8IY42 314 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CCDC36Q8IYA8 594 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 DSELQ8IZU8 1212 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 OR2T34Q8NGX1 318 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 OR2T3Q8NH03 318 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 HTRA1Q92743 480 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SENP6Q9GZR1 1112 aaPredicted RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 EHD1Q9H4M9 534 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 MARCH7Q9H992 704 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.04□□□□□ -0.96
VCL-206ENST00000623461 FARP1Q9Y4F1 1045 aaPredicted RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 GPR75-ASB3A0A0A6YYF3 556 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 RGS14O43566 566 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 TCEA3O75764 348 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SEMA3DO95025 777 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CPSF4O95639 269 aaKnown RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 PEX2P28328 305 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 CCNFP41002 786 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 ENDOVQ8N8Q3 282 aaKnown RBP9.04□□□□□ -0.96
VCL-206ENST00000623461 CAMKK2Q96RR4 588 aa9.04□□□□□ -0.96
VCL-206ENST00000623461 SH2D3AQ9BRG2 576 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms