RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 IFIT5Q13325 482 aaKnown RBP5.64□□□□□ -1.51
VPS29-212ENST00000621131 ERV3-1Q14264 604 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 PGM5Q15124 567 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 SAFBQ15424 915 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS29-212ENST00000621131 MTHFSDQ2M296 383 aaKnown RBP5.64□□□□□ -1.51
VPS29-212ENST00000621131 GLE1Q53GS7 698 aaKnown RBP5.64□□□□□ -1.51
VPS29-212ENST00000621131 MSANTD2Q6P1R3 559 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 ZNF530Q6P9A1 599 aaPredicted RBP5.64□□□□□ -1.51
VPS29-212ENST00000621131 LVRNQ6Q4G3 990 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 DHRS13Q6UX07 377 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 CENPQQ7L2Z9 268 aaPredicted RBP5.64□□□□□ -1.51
VPS29-212ENST00000621131 TXLNBQ8N3L3 684 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 BRI3BPQ8WY22 251 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 KRTAP2-2Q9BYT5 123 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 API5Q9BZZ5 524 aaKnown RBP5.64□□□□□ -1.51
VPS29-212ENST00000621131 THSD1Q9NS62 852 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 TSPYL4Q9UJ04 414 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 DDX19BQ9UMR2 479 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 RGPD2P0DJD1 1756 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 RGPD5Q99666 1765 aa5.64□□□□□ -1.51
VPS29-212ENST00000621131 WNT1P04628 370 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 ZNF853P0CG23 659 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 SRGAP2BP0DMP2 458 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 CBSLP0DN79 551 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 HARSP12081 509 aaKnown RBP5.63□□□□□ -1.51
VPS29-212ENST00000621131 CBSP35520 551 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 NSUN2Q08J23 767 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS29-212ENST00000621131 SEMA3AQ14563 771 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 MVPQ14764 893 aaKnown RBP5.63□□□□□ -1.51
VPS29-212ENST00000621131 INPP5JQ15735 1006 aaPredicted RBP5.63□□□□□ -1.51
VPS29-212ENST00000621131 SMTNL2Q2TAL5 461 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 PRTGQ2VWP7 1150 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 ANXA2RQ3ZCQ2 193 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 PIK3CD-AS1Q5SR53 167 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 ATF7IPQ6VMQ6 1270 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 RFX8Q6ZV50 586 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 MCM10Q7L590 875 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 ITPRIPQ8IWB1 547 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 ZFPM2Q8WW38 1151 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 ARHGAP45Q92619 1136 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 GPR78Q96P69 363 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 EIF3CQ99613 913 aaKnown RBP5.63□□□□□ -1.51
VPS29-212ENST00000621131 PAAF1Q9BRP4 392 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 THUMPD2Q9BTF0 503 aaKnown RBP5.63□□□□□ -1.51
VPS29-212ENST00000621131 TRIM2Q9C040 744 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS29-212ENST00000621131 HIPK2Q9H2X6 1198 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 ERVK-5Q9HDB9 667 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 FSCN3Q9NQT6 498 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 SLIT2O94813 1529 aa5.63□□□□□ -1.51
VPS29-212ENST00000621131 NUP188Q5SRE5 1749 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 TRIP12Q14669 1992 aaPredicted RBP5.62□□□□□ -1.51
VPS29-212ENST00000621131 EVPLQ92817 2033 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 GXYLT2A0PJZ3 443 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 FAM234BA2RU67 622 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 CHL1O00533 1208 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 NPC1O15118 1278 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 PMM2O15305 246 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 NCK2O43639 380 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 FGF18O76093 207 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 KAT7O95251 611 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 PARNO95453 639 aaKnown RBP5.62□□□□□ -1.51
VPS29-212ENST00000621131 HSP90AB1P08238 724 aaKnown RBP5.62□□□□□ -1.51
VPS29-212ENST00000621131 TRIM27P14373 513 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 PRELPP51888 382 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 DCTN1Q14203 1278 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 P3H1Q32P28 736 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 FAM209BQ5JX69 171 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 LIPMQ5VYY2 423 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 KIAA1161Q6NSJ0 714 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 DPP9Q86TI2 863 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 ACRBPQ8NEB7 543 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 PMM1Q92871 262 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 RWDD1Q9H446 243 aaPredicted RBP5.62□□□□□ -1.51
VPS29-212ENST00000621131 IPO11Q9UI26 975 aaKnown RBP5.62□□□□□ -1.51
VPS29-212ENST00000621131 DTNAQ9Y4J8 743 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 PTPRCP08575 1304 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 CRB1P82279 1406 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 SHANK3Q9BYB0 1731 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 COL18A1P39060 1754 aa5.62□□□□□ -1.51
VPS29-212ENST00000621131 COL14A1Q05707 1796 aaKnown RBP5.62□□□□□ -1.51
VPS29-212ENST00000621131 VIRMAQ69YN4 1812 aaKnown RBP5.62□□□□□ -1.51
VPS29-212ENST00000621131 TCERG1O14776 1098 aaKnown RBP5.61□□□□□ -1.51
VPS29-212ENST00000621131 TAF5LO75529 589 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 HOXB7P09629 217 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 CDKN2AP42771 156 aaKnown RBP5.61□□□□□ -1.51
VPS29-212ENST00000621131 POLD2P49005 469 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 PMS2P11Q13670 270 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 DLGAP5Q15398 846 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 TAF7Q15545 349 aaPredicted RBP5.61□□□□□ -1.51
VPS29-212ENST00000621131 SLC35G1Q2M3R5 365 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 UBAP2Q5T6F2 1119 aaKnown RBP5.61□□□□□ -1.51
VPS29-212ENST00000621131 C20orf194Q5TEA3 1177 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 CCDC30Q5VVM6 783 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 NUGGCQ68CJ6 796 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 TOM1L2Q6ZVM7 507 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 KDM3BQ7LBC6 1761 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 PKD1L3Q7Z443 1732 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 RASGRP3Q8IV61 690 aa5.61□□□□□ -1.51
VPS29-212ENST00000621131 B4GALNT2Q8NHY0 566 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms