RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SYCE2Q6PIF2 218 aa14.58□□□□□ -0.08
USP39-220ENST00000613444 CCDC25Q86WR0 208 aa14.58□□□□□ -0.08
USP39-220ENST00000613444 EFHBQ8N7U6 833 aa14.58□□□□□ -0.08
USP39-220ENST00000613444 AGAP3Q96P47 875 aa14.58□□□□□ -0.08
USP39-220ENST00000613444 RBM15Q96T37 977 aaKnown RBP eCLIP14.58□□□□□ -0.08
USP39-220ENST00000613444 TSPYL1Q9H0U9 437 aa14.58□□□□□ -0.08
USP39-220ENST00000613444 KLHL8Q9P2G9 620 aaPredicted RBP14.58□□□□□ -0.08
USP39-220ENST00000613444 EYSQ5T1H1 3165 aa14.58□□□□□ -0.08
USP39-220ENST00000613444 TRIOBPQ9H2D6 2365 aa14.58□□□□□ -0.08
USP39-220ENST00000613444 E7ESA3 106 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 TBL1XO60907 577 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 APRTP07741 180 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 TPSB2P20231 275 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 HOXD9P28356 352 aaPredicted RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 GNA12Q03113 381 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 USP4Q13107 963 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 TPSAB1Q15661 275 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 MSS51Q4VC12 460 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 FNBP1LQ5T0N5 605 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 ZNF534Q76KX8 674 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 SETD3Q86TU7 594 aaPredicted RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 KLHDC8BQ8IXV7 354 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 HJURPQ8NCD3 748 aaPredicted RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 TTC16Q8NEE8 873 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 PPP2R3CQ969Q6 453 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 EXOC4Q96A65 974 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 TMA16Q96EY4 203 aaKnown RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 WDR83Q9BRX9 315 aaKnown RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 PHACTR1Q9C0D0 580 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 MAGEH1Q9H213 219 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 GBA3Q9H227 469 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 PABPC3Q9H361 631 aaKnown RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 PDFQ9HBH1 243 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 CDH22Q9UJ99 828 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 ILVBLA1L0T0 632 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 F5H423 210 aaPredicted RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 AGPSO00116 658 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 WEE1P30291 646 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 ZNF177Q13360 481 aaPredicted RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 FSCBQ5H9T9 825 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 RARS2Q5T160 578 aaKnown RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 C6orf118Q5T5N4 469 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 GPR149Q86SP6 731 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 ARID3BQ8IVW6 561 aaPredicted RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 MCUQ8NE86 351 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 OR7D4Q8NG98 312 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 USP33Q8TEY7 942 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 CDC42EP4Q9H3Q1 356 aaKnown RBP14.57□□□□□ -0.08
USP39-220ENST00000613444 FAM53CQ9NYF3 392 aa14.57□□□□□ -0.08
USP39-220ENST00000613444 BRWD1Q9NSI6 2320 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 PRAMEF11O60813 436 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 TNK2Q07912 1038 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 IL10RBQ08334 325 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 HNRNPDQ14103 355 aaKnown RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 FASTKD3Q14CZ7 662 aaKnown RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 HIF1AQ16665 826 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 CAND1Q86VP6 1230 aaKnown RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 AGGF1Q8N302 714 aaeCLIP14.56□□□□□ -0.08
USP39-220ENST00000613444 TEX26Q8N6G2 289 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 TDRD5Q8NAT2 981 aaKnown RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 WFDC5Q8TCV5 224 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 SERPINB12Q96P63 405 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 LRRC3BQ96PB8 259 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 ZIM3Q96PE6 472 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 ACE2Q9BYF1 805 aaPredicted RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 EIF2B3Q9NR50 452 aaKnown RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 NFS1Q9Y697 457 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 LUC7L3O95232 432 aaKnown RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 HLA-DQB2P05538 268 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 NFKB1P19838 968 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 MAGEA3P43357 314 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 SLC10A7Q0GE19 358 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 LRIT3Q3SXY7 679 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 MPP7Q5T2T1 576 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 KCTD11Q693B1 232 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 ANKRD54Q6NXT1 300 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 TRMT10CQ7L0Y3 403 aaKnown RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 NPAS3Q8IXF0 933 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 PDCD7Q8N8D1 485 aaKnown RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 UBLCP1Q8WVY7 318 aaPredicted RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 MLPHQ9BV36 600 aaPredicted RBP14.56□□□□□ -0.08
USP39-220ENST00000613444 APOL5Q9BWW9 433 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 OR51B4Q9Y5P0 310 aa14.56□□□□□ -0.08
USP39-220ENST00000613444 KIF26AQ9ULI4 1882 aaPredicted RBP14.55□□□□□ -0.08
USP39-220ENST00000613444 ALOX15BO15296 676 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 RIPK2O43353 540 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 BANF1O75531 89 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 RHOCP08134 193 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 GRIA1P42261 906 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 MAGEA4P43358 317 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 NUMBP49757 651 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 ADAM15Q13444 863 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 FYB2Q5VWT5 728 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 ALS2CLQ60I27 953 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 OTOP3Q7RTS5 596 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 ZBTB9Q96C00 473 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 RSPRY1Q96DX4 576 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 ALG14Q96F25 216 aa14.55□□□□□ -0.08
USP39-220ENST00000613444 TTYH1Q9H313 450 aaPredicted RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms