RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TTC34A8MYJ7 566 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 CBX4O00257 560 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 SPOPO43791 374 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 ALDH1A2O94788 518 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 MT-CO1P00395 513 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 GABRG2P18507 467 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 NNMTP40261 264 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 YBEYP58557 167 aaPredicted RBP16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 CAMK2GQ13555 558 aaPredicted RBP16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 DPYSL3Q14195 570 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 PDK2Q15119 407 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 HNRNPA1L2Q32P51 320 aaKnown RBP16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 IL31Q6EBC2 164 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 LONP2Q86WA8 852 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 KCTD6Q8NC69 237 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 HMGB4Q8WW32 186 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 PDLIM2Q96JY6 352 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 MTG2Q9H4K7 406 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 TRIM10Q9UDY6 481 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 SUN2Q9UH99 717 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 ARIH1Q9Y4X5 557 aaPredicted RBP16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 PCDHGA2Q9Y5H1 932 aa16.93■□□□□ 0.3
CCDC28A-202ENST00000611852 FANCMQ8IYD8 2048 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 NUP205Q92621 2012 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 RASA4BC9J798 803 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 AXIN1O15169 862 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 RASA4O43374 803 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 ATP9BO43861 1147 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 AMPD1P23109 780 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 NAP1L1P55209 391 aaKnown RBP16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 ARF5P84085 180 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 MMRN1Q13201 1228 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 PARP15Q460N3 678 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 AFMIDQ63HM1 303 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 LINGO4Q6UY18 593 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 DAAM2Q86T65 1068 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 WDR5BQ86VZ2 330 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 RHOT1Q8IXI2 618 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 SH2D3CQ8N5H7 860 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 FRS2Q8WU20 508 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 RAPGEF5Q92565 580 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 ATOH1Q92858 354 aaPredicted RBP16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 CALN1Q9BXU9 219 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 MKRN2Q9H000 416 aaKnown RBP16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 LRRC19Q9H756 370 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 PRSS16Q9NQE7 514 aa16.92■□□□□ 0.3
CCDC28A-202ENST00000611852 CXorf51AA0A1B0GTR3 108 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 DCLK1O15075 740 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 NRDCO43847 1150 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 SRCP12931 536 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 NDUFV2P19404 249 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 KDELR1P24390 212 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 NDST2P52849 883 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 COPAP53621 1224 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 ZFYVE27Q5T4F4 411 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 RETSATQ6NUM9 610 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 MAP7D3Q8IWC1 876 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 NPWQ8N729 165 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 PTPRN2Q92932 1015 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 HMCESQ96FZ2 354 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 CELF6Q96J87 481 aaKnown RBP16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 MRGPRX1Q96LB2 322 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 ZNF670Q9BS34 389 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 TPSD1Q9BZJ3 242 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 ETNK2Q9NVF9 386 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 BCCIPQ9P287 314 aaKnown RBP eCLIP16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 HPCAL4Q9UM19 191 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 MFHAS1Q9Y4C4 1052 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 R4GN57 208 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 EDDM13A0A1B0GTR0 161 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 MACROD2A1Z1Q3 448 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 K7ERQ8 282 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 ZBTB24O43167 697 aaPredicted RBP16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 KDELR3O43731 214 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 LILRB5O75023 590 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 TNNT1P13805 278 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 SLC20A2Q08357 652 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 SERINC3Q13530 473 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 DLG2Q15700 870 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 ACCSLQ4AC99 568 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 C9orf64Q5T6V5 341 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 ZC3H14Q6PJT7 736 aaKnown RBP16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 TMCO3Q6UWJ1 677 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 ARHGAP12Q8IWW6 846 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 PGBD3Q8N328 593 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 LZTR1Q8N653 840 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 LRRC57Q8N9N7 239 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 ATP11CQ8NB49 1132 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 OR2T3Q8NH03 318 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 FAF2Q96CS3 445 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 SLC39A8Q9C0K1 460 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 SLC6A17Q9H1V8 727 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 FAM86C1Q9NVL1 165 aa16.91■□□□□ 0.3
CCDC28A-202ENST00000611852 EML5Q05BV3 1969 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 TARSL2A2RTX5 802 aaKnown RBP16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 LRRD1A4D1F6 860 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 GRID2IPA4D2P6 1211 aa16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 C3orf70A6NLC5 250 aaPredicted RBP16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 SMAD6O43541 496 aaKnown RBP16.9■□□□□ 0.3
CCDC28A-202ENST00000611852 PSTPIP1O43586 416 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms