RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ATP13A1Q9HD20 1204 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 SPTLC3Q9NUV7 552 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 NDFIP2Q9NV92 336 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 GPATCH2LQ9NWQ4 482 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 USP18Q9UMW8 372 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 SDK1Q7Z5N4 2213 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 WDR87Q6ZQQ6 2873 aa17.26■□□□□ 0.35
TRIM28-215ENST00000601150 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 MYO1FO00160 1098 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 CBX4O00257 560 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 FGF10O15520 208 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-215ENST00000601150 NDUFS2O75306 463 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 DNTTP04053 509 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 CD6P30203 668 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 DHPSP49366 369 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-215ENST00000601150 TPI1P60174 286 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 DLG2Q15700 870 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 IL31Q6EBC2 164 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 RETSATQ6NUM9 610 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 CYP4V2Q6ZWL3 525 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-215ENST00000601150 TMEFF1Q8IYR6 380 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 ATP11CQ8NB49 1132 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 ZNF564Q8TBZ8 553 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-215ENST00000601150 BTBD6Q96KE9 485 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 MAGEH1Q9H213 219 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 ARRDC1-AS1Q9H2J1 176 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 CTTNBP2NLQ9P2B4 639 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 UVRAGQ9P2Y5 699 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 SCML1Q9UN30 329 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 DMDP11532 3685 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 GVINP1Q7Z2Y8 2422 aa17.25■□□□□ 0.35
TRIM28-215ENST00000601150 BCLAF3A2AJT9 711 aaKnown RBP17.24■□□□□ 0.35
TRIM28-215ENST00000601150 WASH4PA8MWX3 477 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 EEF2KO00418 725 aaKnown RBP17.24■□□□□ 0.35
TRIM28-215ENST00000601150 RAMP2O60895 175 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 ZMPSTE24O75844 475 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 MT-CO1P00395 513 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 TMEM253P0C7T8 217 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 SRCP12931 536 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 VAV1P15498 845 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 GLDCP23378 1020 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 ACVRL1P37023 503 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 CLCN6P51797 869 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 CREB5Q02930 508 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 SLC20A2Q08357 652 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 ELAVL3Q14576 367 aaKnown RBP17.24■□□□□ 0.35
TRIM28-215ENST00000601150 CA9Q16790 459 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 TTC31Q49AM3 519 aaPredicted RBP17.24■□□□□ 0.35
TRIM28-215ENST00000601150 DAB2IPQ5VWQ8 1189 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 LINGO4Q6UY18 593 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 CYP2U1Q7Z449 544 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 STK40Q8N2I9 435 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 ARHGEF2Q92974 986 aaKnown RBP17.24■□□□□ 0.35
TRIM28-215ENST00000601150 TOE1Q96GM8 510 aaKnown RBP17.24■□□□□ 0.35
TRIM28-215ENST00000601150 FAM129BQ96TA1 746 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 ACE2Q9BYF1 805 aaPredicted RBP17.24■□□□□ 0.35
TRIM28-215ENST00000601150 PARD6AQ9NPB6 346 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 DONSONQ9NYP3 566 aa17.24■□□□□ 0.35
TRIM28-215ENST00000601150 PTPRZ1P23471 2315 aaPredicted RBP17.24■□□□□ 0.35
TRIM28-215ENST00000601150 FRYLO94915 3013 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 TGM1P22735 817 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 IL1R2P27930 398 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 MPLP40238 635 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 ZNF135P52742 658 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-215ENST00000601150 YBEYP58557 167 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-215ENST00000601150 SFSWAPQ12872 951 aaKnown RBP17.23■□□□□ 0.35
TRIM28-215ENST00000601150 POLD3Q15054 466 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-215ENST00000601150 CST6Q15828 149 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 CSRP2Q16527 193 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 BOLA3Q53S33 107 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 PPP6R3Q5H9R7 873 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-215ENST00000601150 Q6ZVU0 165 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 ARMCX6Q7L4S7 300 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 DSG4Q86SJ6 1040 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 FAM124AQ86V42 546 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 MMAAQ8IVH4 418 aaKnown RBP17.23■□□□□ 0.35
TRIM28-215ENST00000601150 KIAA2013Q8IYS2 634 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 OR8D1Q8WZ84 308 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 KCTD15Q96SI1 283 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-215ENST00000601150 PABPC3Q9H361 631 aaKnown RBP17.23■□□□□ 0.35
TRIM28-215ENST00000601150 SEMA4GQ9NTN9 838 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 WSB2Q9NYS7 404 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-215ENST00000601150 LCMT1Q9UIC8 334 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 HPCAL4Q9UM19 191 aa17.23■□□□□ 0.35
TRIM28-215ENST00000601150 CXorf51AA0A1B0GTR3 108 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 K7ERQ8 282 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 ALOX15BO15296 676 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 DAPK3O43293 454 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 SMAD6O43541 496 aaKnown RBP17.22■□□□□ 0.35
TRIM28-215ENST00000601150 FOXD2O60548 495 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-215ENST00000601150 ADH1BP00325 375 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 SLC8A1P32418 973 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 DPP6P42658 865 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 PTGER3P43115 390 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 SERPINH1P50454 418 aaKnown RBP17.22■□□□□ 0.35
TRIM28-215ENST00000601150 GEMIN4P57678 1058 aaKnown RBP17.22■□□□□ 0.35
TRIM28-215ENST00000601150 ARF5P84085 180 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 PLA2G2CQ5R387 149 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 LYSMD4Q5XG99 296 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 USP30Q70CQ3 517 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms