RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 OTOFQ9HC10 1997 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 PDLIM1O00151 329 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 GPR25O00155 361 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 CNMDO75829 334 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 ADORA2BP29275 332 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 EMP3P54852 163 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 NR1H2P55055 460 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 FAM110BQ8TC76 370 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 DCPSQ96C86 337 aaKnown RBP18.7■□□□□ 0.58
UPF1-210ENST00000600689 CERS2Q96G23 380 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 MTMR10Q9NXD2 777 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 RSL24D1Q9UHA3 163 aaKnown RBP18.7■□□□□ 0.58
UPF1-210ENST00000600689 ZDHHC2Q9UIJ5 367 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 RNF11Q9Y3C5 154 aa18.7■□□□□ 0.58
UPF1-210ENST00000600689 KCNU1A8MYU2 1149 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 TRIM13O60858 407 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 ATP5BP06576 529 aaKnown RBP18.69■□□□□ 0.58
UPF1-210ENST00000600689 C2P06681 752 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 GP5P40197 560 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 GRIA4P48058 902 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 SEL1L3Q68CR1 1132 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 AHI1Q8N157 1196 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 FAM149B1Q96BN6 582 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 KCTD15Q96SI1 283 aaPredicted RBP18.69■□□□□ 0.58
UPF1-210ENST00000600689 STN1Q9H668 368 aaKnown RBP18.69■□□□□ 0.58
UPF1-210ENST00000600689 TMEM134Q9H6X4 195 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 EPHX2P34913 555 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 GARSP41250 739 aaKnown RBP18.69■□□□□ 0.58
UPF1-210ENST00000600689 PTK2BQ14289 1009 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 MPZL3Q6UWV2 235 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 CLVS1Q8IUQ0 354 aaPredicted RBP18.69■□□□□ 0.58
UPF1-210ENST00000600689 FBXO16Q8IX29 292 aaPredicted RBP18.69■□□□□ 0.58
UPF1-210ENST00000600689 CSPG4P5Q96PW8 444 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 APBA2Q99767 749 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 SLC29A1Q99808 456 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 CDT1Q9H211 546 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 NMRAL1Q9HBL8 299 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 GINS2Q9Y248 185 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 MCM3APO60318 1980 aa18.69■□□□□ 0.58
UPF1-210ENST00000600689 MFSD11O43934 449 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 VAPBO95292 243 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 NDST2P52849 883 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 PIGGQ5H8A4 983 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 NUP93Q8N1F7 819 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 SEPT1Q8WYJ6 367 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 NOL11Q9H8H0 719 aaKnown RBP18.68■□□□□ 0.58
UPF1-210ENST00000600689 SAC3D1A6NKF1 404 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 G3V2L1 256 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 GCATO75600 419 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 PIM1P11309 404 aaPredicted RBP18.68■□□□□ 0.58
UPF1-210ENST00000600689 MGAT5BQ3V5L5 792 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 ANKRD23Q86SG2 305 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 APBB2Q92870 758 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 RTP4Q96DX8 246 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 SLC39A3Q9BRY0 314 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 EPB41L1Q9H4G0 881 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 IARS2Q9NSE4 1012 aaKnown RBP18.68■□□□□ 0.58
UPF1-210ENST00000600689 EBF1Q9UH73 591 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 DNAH12Q6ZR08 3092 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 SOCS7O14512 581 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 AP1G1O43747 822 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 MAFO75444 373 aaPredicted RBP18.68■□□□□ 0.58
UPF1-210ENST00000600689 POLBP06746 335 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 STAG3L1P0CL83 205 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 VDRP11473 427 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 IMPDH2P12268 514 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 PGAM1P18669 254 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 CNTFP26441 200 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 METTL7BQ6UX53 244 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 RNF169Q8NCN4 708 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 P2RY11Q96G91 374 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 IL1RL2Q9HB29 575 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 RRN3Q9NYV6 651 aa18.68■□□□□ 0.58
UPF1-210ENST00000600689 CLIC3O95833 236 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 IQCF3P0C7M6 154 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 MYL4P12829 197 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 TFEBP19484 476 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 TPSB2P20231 275 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 TPSAB1Q15661 275 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 CERCAMQ5T4B2 595 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 TTC30AQ86WT1 665 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 ACMSDQ8TDX5 336 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 GTSE1Q9NYZ3 720 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 KLHL8Q9P2G9 620 aaPredicted RBP18.67■□□□□ 0.58
UPF1-210ENST00000600689 SFMBT1Q9UHJ3 866 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 ZNF510Q9Y2H8 683 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 A0A0G2JLL6 359 aaPredicted RBP18.67■□□□□ 0.58
UPF1-210ENST00000600689 ZBTB42B2RXF5 422 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 PFKMP08237 780 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 ABCD1P33897 745 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 NME5P56597 212 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 IFRD2Q12894 506 aaPredicted RBP18.67■□□□□ 0.58
UPF1-210ENST00000600689 SEMA5AQ13591 1074 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 DGKDQ16760 1214 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 PRRT2Q7Z6L0 340 aaPredicted RBP18.67■□□□□ 0.58
UPF1-210ENST00000600689 ADCY4Q8NFM4 1077 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 URGCPQ8TCY9 931 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 GCOM2Q9BZD3 368 aaPredicted RBP18.67■□□□□ 0.58
UPF1-210ENST00000600689 ZNF696Q9H7X3 374 aa18.67■□□□□ 0.58
UPF1-210ENST00000600689 CLEC11AQ9Y240 323 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms