RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ERVK-21P61565 698 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 ZNF662Q6ZS27 426 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 TMEM110Q86TL2 294 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 STMN2Q93045 179 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 CSPG4P5Q96PW8 444 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 CRTAC1Q9NQ79 661 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 SAE1Q9UBE0 346 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 SCML2Q9UQR0 700 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 RREB1Q92766 1687 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 PDZK1P1A8MUH7 402 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 DNALI1O14645 258 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 TEX28O15482 410 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 IRAK2O43187 625 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 TRIM16O95361 564 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 ZNF7P17097 686 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 MAPKAPK2P49137 400 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 TAF5Q15542 800 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 BPIFB1Q8TDL5 484 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 ADAM33Q9BZ11 813 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 ZCWPW1Q9H0M4 648 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 CHST7Q9NS84 486 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 IARS2Q9NSE4 1012 aaKnown RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 TDP1Q9NUW8 608 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 MTRRQ9UBK8 725 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 G3BP2Q9UN86 482 aaKnown RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 MYH4Q9Y623 1939 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 GOLGA8RI6L899 631 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 NFKB1P19838 968 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 RBBP7Q16576 425 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 FAM83EQ2M2I3 478 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 FAM26DQ5JW98 314 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 PTAR1Q7Z6K3 402 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 ZC3H3Q8IXZ2 948 aaKnown RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 PHACTR4Q8IZ21 702 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 BCAS4Q8TDM0 211 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 WFIKKN2Q8TEU8 576 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 TTYH3Q9C0H2 523 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 LMAN2LQ9H0V9 348 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 MAGEH1Q9H213 219 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 COL11A2P13942 1736 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 LRIG2O94898 1065 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 EPHX1P07099 455 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 HOXD8P13378 290 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 PBLDP30039 288 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 HMOX2P30519 316 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 GNA12Q03113 381 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 MGAT5Q09328 741 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 ILF2Q12905 390 aaKnown RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 LBRQ14739 615 aaKnown RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 UBXN2BQ14CS0 331 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 POM121L1PQ3SYA9 428 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 DAB2IPQ5VWQ8 1189 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 ANKRD33Q7Z3H0 272 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 ARMC5Q96C12 935 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 EXOC2Q96KP1 924 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 SMOQ99835 787 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 ROPN1BQ9BZX4 212 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 SDCBP2Q9H190 292 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 XYLT2Q9H1B5 865 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 NSUN3Q9H649 340 aaKnown RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 ROPN1Q9HAT0 212 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 NR2E1Q9Y466 385 aa10.01□□□□□ -0.81
LIG3-216ENST00000593099 ZFP37Q9Y6Q3 630 aaPredicted RBP10.01□□□□□ -0.81
LIG3-216ENST00000593099 MYH6P13533 1939 aa10□□□□□ -0.81
LIG3-216ENST00000593099 IFRD1O00458 451 aaPredicted RBP10□□□□□ -0.81
LIG3-216ENST00000593099 TBX18O95935 607 aa10□□□□□ -0.81
LIG3-216ENST00000593099 FOSL2P15408 326 aa10□□□□□ -0.81
LIG3-216ENST00000593099 WASP42768 502 aa10□□□□□ -0.81
LIG3-216ENST00000593099 MARCKSL1P49006 195 aa10□□□□□ -0.81
LIG3-216ENST00000593099 PHEXP78562 749 aa10□□□□□ -0.81
LIG3-216ENST00000593099 XRCC4Q13426 336 aa10□□□□□ -0.81
LIG3-216ENST00000593099 DPYSL3Q14195 570 aa10□□□□□ -0.81
LIG3-216ENST00000593099 RINLQ6ZS11 566 aa10□□□□□ -0.81
LIG3-216ENST00000593099 KIRREL3Q8IZU9 778 aa10□□□□□ -0.81
LIG3-216ENST00000593099 RIBC1Q8N443 379 aaPredicted RBP10□□□□□ -0.81
LIG3-216ENST00000593099 FBXO25Q8TCJ0 367 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SHDQ96IW2 340 aa10□□□□□ -0.81
LIG3-216ENST00000593099 TSC22D3Q99576 134 aa10□□□□□ -0.81
LIG3-216ENST00000593099 GKN1Q9NS71 199 aa10□□□□□ -0.81
LIG3-216ENST00000593099 PCMTD2Q9NV79 361 aa10□□□□□ -0.81
LIG3-216ENST00000593099 FBXW11Q9UKB1 542 aa10□□□□□ -0.81
LIG3-216ENST00000593099 MAFFQ9ULX9 164 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SMG5Q9UPR3 1016 aaKnown RBP10□□□□□ -0.81
LIG3-216ENST00000593099 TLR6Q9Y2C9 796 aa10□□□□□ -0.81
LIG3-216ENST00000593099 ANKRD31Q8N7Z5 1873 aa10□□□□□ -0.81
LIG3-216ENST00000593099 A8MX80 341 aa10□□□□□ -0.81
LIG3-216ENST00000593099 ZBTB42B2RXF5 422 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SUPT3HB4E1H0 165 aa10□□□□□ -0.81
LIG3-216ENST00000593099 MGEA5O60502 916 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SUPT3HO75486 399 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SERPINI2O75830 405 aa10□□□□□ -0.81
LIG3-216ENST00000593099 UNGP13051 313 aaPredicted RBP10□□□□□ -0.81
LIG3-216ENST00000593099 PSMB4P28070 264 aa10□□□□□ -0.81
LIG3-216ENST00000593099 MPP3Q13368 585 aa10□□□□□ -0.81
LIG3-216ENST00000593099 FLOT2Q14254 428 aa10□□□□□ -0.81
LIG3-216ENST00000593099 PDGFRLQ15198 375 aa10□□□□□ -0.81
LIG3-216ENST00000593099 TEAD2Q15562 447 aa10□□□□□ -0.81
LIG3-216ENST00000593099 LONRF1Q17RB8 773 aa10□□□□□ -0.81
LIG3-216ENST00000593099 CCDC80Q76M96 950 aa10□□□□□ -0.81
LIG3-216ENST00000593099 SLC39A11Q8N1S5 342 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms