RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 FOXD4L6Q3SYB3 417 aaPredicted RBP13.11□□□□□ -0.31
SS18-219ENST00000581570 ZNF542PQ5EBM4 170 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 COLEC12Q5KU26 742 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 C6orf132Q5T0Z8 1188 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 FOXR1Q6PIV2 292 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 FOXD4L3Q6VB84 417 aaPredicted RBP13.11□□□□□ -0.31
SS18-219ENST00000581570 CHSY1Q86X52 802 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 ARL14Q8N4G2 192 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 ERCC4Q92889 916 aaPredicted RBP13.11□□□□□ -0.31
SS18-219ENST00000581570 IFT43Q96FT9 208 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 NOX5Q96PH1 765 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 MIS12Q9H081 205 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 FZD3Q9NPG1 666 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 DNAJC28Q9NX36 388 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 ENTPD2Q9Y5L3 495 aa13.11□□□□□ -0.31
SS18-219ENST00000581570 MCF2LO15068 1137 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 ALOX15BO15296 676 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 ATP9BO43861 1147 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 BNIP3LO60238 219 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 FBXO21O94952 628 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 APOEP02649 317 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 HNRNPA2B1P22626 353 aaKnown RBP13.1□□□□□ -0.31
SS18-219ENST00000581570 PLK1P53350 603 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 CLDN2P57739 230 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 HNRNPKP61978 463 aaKnown RBP eCLIP13.1□□□□□ -0.31
SS18-219ENST00000581570 CLN3Q13286 438 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 DLG2Q15700 870 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 CDKN3Q16667 212 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 ZNF284Q2VY69 593 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 NEK5Q6P3R8 708 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 XKR5Q6UX68 686 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 EFL1Q7Z2Z2 1120 aaKnown RBP13.1□□□□□ -0.31
SS18-219ENST00000581570 HORMAD1Q86X24 394 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 CCAR2Q8N163 923 aaKnown RBP13.1□□□□□ -0.31
SS18-219ENST00000581570 TPCN2Q8NHX9 752 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 TFAP2BQ92481 460 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 CCDC47Q96A33 483 aaKnown RBP13.1□□□□□ -0.31
SS18-219ENST00000581570 ARRDC3Q96B67 414 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 HSFY1Q96LI6 401 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 CCNL2Q96S94 520 aaPredicted RBP13.1□□□□□ -0.31
SS18-219ENST00000581570 WDR70Q9NW82 654 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 SLC25A13Q9UJS0 675 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 NAALADL1Q9UQQ1 740 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 HECTD1Q9ULT8 2610 aa13.1□□□□□ -0.31
SS18-219ENST00000581570 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 F5H5T6 163 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 M0QYV0 167 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 TERTO14746 1132 aaKnown RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 EFSO43281 561 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 TNFSF15O95150 251 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 MYL1P05976 194 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 OXCT1P55809 520 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 CCDC15Q0P6D6 951 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 ZNF177Q13360 481 aaPredicted RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 CNGA2Q16280 664 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 LINC00303Q3SY05 128 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 CBWD6Q4V339 395 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 ZC3H12AQ5D1E8 599 aaKnown RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 CBWD3Q5JTY5 395 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 CBWD5Q5RIA9 395 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 PIP5KL1Q5T9C9 394 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 FOXD4L5Q5VV16 416 aaPredicted RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 ZCCHC8Q6NZY4 707 aaKnown RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 GUSBP11Q6P575 273 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 ATG14Q6ZNE5 492 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 GCNT7Q6ZNI0 430 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 RBM44Q6ZP01 1051 aaKnown RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 Q6ZSR6 202 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 Q6ZVU0 165 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 ABI3BPQ7Z7G0 1075 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 CLEC14AQ86T13 490 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 TAC4Q86UU9 113 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 CIR1Q86X95 450 aaPredicted RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 DCP2Q8IU60 420 aaKnown RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 SLC22A18ASQ8N1D0 253 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 WDR36Q8NI36 951 aaKnown RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 FOXD4L4Q8WXT5 416 aaPredicted RBP13.09□□□□□ -0.31
SS18-219ENST00000581570 FAM149B1Q96BN6 582 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 BTN2A3PQ96KV6 586 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 PPP1R9BQ96SB3 815 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 NCKIPSDQ9NZQ3 722 aa13.09□□□□□ -0.31
SS18-219ENST00000581570 PMS2P1A4D2B8 440 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 EME2A4GXA9 379 aaPredicted RBP13.08□□□□□ -0.32
SS18-219ENST00000581570 A6NNZ2 444 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 RHOBTB3O94955 611 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 PCDH8O95206 1070 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 PAEPP09466 180 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 EPB41P11171 864 aaKnown RBP13.08□□□□□ -0.32
SS18-219ENST00000581570 PYGBP11216 843 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 MLLT3P42568 568 aaPredicted RBP13.08□□□□□ -0.32
SS18-219ENST00000581570 NFKB2Q00653 900 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 TCERG1LQ5VWI1 586 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 OR6B2Q6IFH4 312 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 CXorf57Q6NSI4 855 aaKnown RBP13.08□□□□□ -0.32
SS18-219ENST00000581570 TMEM270Q6UE05 265 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 CRTC1Q6UUV9 634 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 PTAR1Q7Z6K3 402 aaPredicted RBP13.08□□□□□ -0.32
SS18-219ENST00000581570 GUF1Q8N442 669 aaKnown RBP13.08□□□□□ -0.32
SS18-219ENST00000581570 UBR7Q8N806 425 aa13.08□□□□□ -0.32
SS18-219ENST00000581570 ATP6V0D2Q8N8Y2 350 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms