RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 RIN3Q8TB24 985 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 TEKT5Q96M29 485 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 MYADMQ96S97 322 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 PNKPQ96T60 521 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 FAM83CQ9BQN1 747 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 TRIM51Q9BSJ1 452 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 C2orf49Q9BVC5 232 aaPredicted RBP15.61■□□□□ 0.09
SS18-215ENST00000580642 PHACTR1Q9C0D0 580 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 POMKQ9H5K3 350 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 UBE2ZQ9H832 354 aaPredicted RBP15.61■□□□□ 0.09
SS18-215ENST00000580642 SP110Q9HB58 689 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 TPX2Q9ULW0 747 aaKnown RBP15.61■□□□□ 0.09
SS18-215ENST00000580642 SHOC2Q9UQ13 582 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 USP15Q9Y4E8 981 aaPredicted RBP15.61■□□□□ 0.09
SS18-215ENST00000580642 OR51B4Q9Y5P0 310 aa15.61■□□□□ 0.09
SS18-215ENST00000580642 DOCK4Q8N1I0 1966 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 ERI2A8K979 691 aaKnown RBP15.6■□□□□ 0.09
SS18-215ENST00000580642 ANHXE9PGG2 379 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 DNALI1O14645 258 aaPredicted RBP15.6■□□□□ 0.09
SS18-215ENST00000580642 TRDMT1O14717 391 aaKnown RBP15.6■□□□□ 0.09
SS18-215ENST00000580642 CHADO15335 359 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 CACNG3O60359 315 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 MAP3K6O95382 1288 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 PSMC3P17980 439 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 CES1P23141 567 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 PTPN3P26045 913 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 HSPA9P38646 679 aaKnown RBP15.6■□□□□ 0.09
SS18-215ENST00000580642 VIPR2P41587 438 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 RPL21P46778 160 aaKnown RBP15.6■□□□□ 0.09
SS18-215ENST00000580642 SGSHP51688 502 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 GPS1Q13098 491 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 DHCR24Q15392 516 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 PREPLQ4J6C6 727 aaPredicted RBP15.6■□□□□ 0.09
SS18-215ENST00000580642 ANKRD20A2Q5SQ80 823 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 ANKRD20A1Q5TYW2 823 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 ANKRD20A3Q5VUR7 823 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 EMBQ6PCB8 327 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 RHBDF2Q6PJF5 856 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 ARHGEF18Q6ZSZ5 1173 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 TMEM25Q86YD3 366 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 YAF2Q8IY57 180 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 PLCD3Q8N3E9 789 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 CARNMT1Q8N4J0 409 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 ART4Q93070 314 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 RSPRY1Q96DX4 576 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 LRRC3BQ96PB8 259 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 XPO6Q96QU8 1125 aaKnown RBP15.6■□□□□ 0.09
SS18-215ENST00000580642 FEM1AQ9BSK4 669 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 BBS2Q9BXC9 721 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 EIF2B3Q9NR50 452 aaKnown RBP15.6■□□□□ 0.09
SS18-215ENST00000580642 MTRF1LQ9UGC7 380 aaKnown RBP15.6■□□□□ 0.09
SS18-215ENST00000580642 FBXO10Q9UK96 956 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 SNX24Q9Y343 169 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 WNT6Q9Y6F9 365 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 C2orf16Q68DN1 1984 aa15.6■□□□□ 0.09
SS18-215ENST00000580642 GOLGA6CA6NDK9 693 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 GOLGA6BA6NDN3 693 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 PSMD3O43242 534 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 PEX11BO96011 259 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 GOLGA6DP0CG33 693 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 VASPP50552 380 aaPredicted RBP15.59■□□□□ 0.09
SS18-215ENST00000580642 VSNL1P62760 191 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 SULT2A1Q06520 285 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 SEMA5AQ13591 1074 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 LY6G5CQ5SRR4 150 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 MARC1Q5VT66 337 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 RNF219Q5W0B1 726 aaPredicted RBP15.59■□□□□ 0.09
SS18-215ENST00000580642 IL31Q6EBC2 164 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 TANGO2Q6ICL3 276 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 RETSATQ6NUM9 610 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 VITQ6UXI7 678 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 PPP1R21Q6ZMI0 780 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 TPGS1Q6ZTW0 290 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 TP53INP2Q8IXH6 220 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 KLHDC8BQ8IXV7 354 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 PPIL6Q8IXY8 311 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 ZNF567Q8N184 647 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 CPA6Q8N4T0 437 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 HLA-CQ95604 372 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 EXOC4Q96A65 974 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 ALG14Q96F25 216 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 LMLNQ96KR4 655 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 FAM161BQ96MY7 647 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 MUC3BQ9H195 1237 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 LINC00597Q9H2U6 94 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 PDFQ9HBH1 243 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 ATP13A1Q9HD20 1204 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 GOLGA6AQ9NYA3 693 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 GRHL1Q9NZI5 618 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 KLHL8Q9P2G9 620 aaPredicted RBP15.59■□□□□ 0.09
SS18-215ENST00000580642 ANAPC5Q9UJX4 755 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 FAM50BQ9Y247 325 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 SLC27A6Q9Y2P4 619 aa15.59■□□□□ 0.09
SS18-215ENST00000580642 DOCK6Q96HP0 2047 aa15.58■□□□□ 0.09
SS18-215ENST00000580642 A0A0D9SEW6 157 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 KCNK1O00180 336 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 AP3B1O00203 1094 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 NEBLO76041 1014 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 JCHAINP01591 159 aa15.58■□□□□ 0.08
SS18-215ENST00000580642 ZSCAN5DPP0CG00 497 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms