RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SPPL3Q8TCT6 385 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 TBC1D20Q96BZ9 403 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 IFT27Q9BW83 186 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 HIPK3Q9H422 1215 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 PPCSQ9HAB8 311 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 TBC1D14Q9P2M4 693 aa6.9□□□□□ -1.3
SS18-214ENST00000580003 H0YGN5 161 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 NTN1O95631 604 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 KLKB1P03952 638 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 CSF1P09603 554 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 SNHG28P0DPA3 235 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 FCGR2AP12318 317 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 AVPR2P30518 371 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 HALP42357 657 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 ARL4CP56559 192 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 GOLGA8FQ08AF8 430 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 ASPHD1Q5U4P2 390 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 AADACL2Q6P093 401 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 LVRNQ6Q4G3 990 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 BRSK2Q8IWQ3 736 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 CMASQ8NFW8 434 aaPredicted RBP6.89□□□□□ -1.31
SS18-214ENST00000580003 RBM17Q96I25 401 aaKnown RBP6.89□□□□□ -1.31
SS18-214ENST00000580003 EBF3Q9H4W6 596 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 MAP6D1Q9H9H5 199 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 RRP7AQ9Y3A4 280 aaKnown RBP6.89□□□□□ -1.31
SS18-214ENST00000580003 SLC4A4Q9Y6R1 1079 aa6.89□□□□□ -1.31
SS18-214ENST00000580003 TRBV5-7A0A0A0MS05 114 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 INSIG1O15503 277 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 METTL18O95568 372 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 CDC25AP30304 524 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 KCNJ4P48050 445 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 P2RX3P56373 397 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 TMEM268Q5VZI3 342 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 PARM1Q6UWI2 310 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 GPSM1Q86YR5 675 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 C2CD5Q86YS7 1000 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 CAMK1DQ8IU85 385 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 FAM217AQ8IXS0 508 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 ANKRD44Q8N8A2 993 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 LINS1Q8NG48 757 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 CEP70Q8NHQ1 597 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 RILPL2Q969X0 211 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 FRG2BQ96QU4 278 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 HERC2P3Q9BVR0 1158 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 FEM1BQ9UK73 627 aa6.88□□□□□ -1.31
SS18-214ENST00000580003 B9A039 149 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 STX16-NPEPL1H3BU86 382 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 STX16O14662 325 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 STRNO43815 780 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 TMCC1O94876 653 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 ARSAP15289 507 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 PRKCHP24723 683 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 SKIV2L2P42285 1042 aaKnown RBP6.87□□□□□ -1.31
SS18-214ENST00000580003 PAPOLAP51003 745 aaKnown RBP6.87□□□□□ -1.31
SS18-214ENST00000580003 LINC00205P59089 165 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 FHL1Q13642 323 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 CTXN3Q4LDR2 81 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 Q5PR19 223 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 ANKRD42Q8N9B4 389 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 PPP1R10Q96QC0 940 aaKnown RBP6.87□□□□□ -1.31
SS18-214ENST00000580003 ISCA1Q9BUE6 129 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 ISCUQ9H1K1 167 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 NOD2Q9HC29 1040 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 ITM2CQ9NQX7 267 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 SIRT3Q9NTG7 399 aaPredicted RBP6.87□□□□□ -1.31
SS18-214ENST00000580003 UPB1Q9UBR1 384 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 DHDHQ9UQ10 334 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 RAP2CQ9Y3L5 183 aa6.87□□□□□ -1.31
SS18-214ENST00000580003 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.86□□□□□ -1.31
SS18-214ENST00000580003 SAC3D1A6NKF1 404 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 ARHGAP8P85298 464 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 WASHC2DQ5SRD0 308 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 ZNF549Q6P9A3 640 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 SLC16A12Q6ZSM3 486 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 LRRC57Q8N9N7 239 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 FAR1Q8WVX9 515 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 NCSTNQ92542 709 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 INPP5DQ92835 1189 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 WACQ9BTA9 647 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 B3GNT4Q9C0J1 378 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 RBM38Q9H0Z9 239 aaKnown RBP6.86□□□□□ -1.31
SS18-214ENST00000580003 ZDHHC7Q9NXF8 308 aa6.86□□□□□ -1.31
SS18-214ENST00000580003 RPS10-NUDT3A0A1W2PQS6 291 aa6.85□□□□□ -1.31
SS18-214ENST00000580003 TNFSF8P32971 234 aa6.85□□□□□ -1.31
SS18-214ENST00000580003 MVDP53602 400 aa6.85□□□□□ -1.31
SS18-214ENST00000580003 FOXG1P55316 489 aaPredicted RBP6.85□□□□□ -1.31
SS18-214ENST00000580003 BYSLQ13895 437 aaKnown RBP6.85□□□□□ -1.31
SS18-214ENST00000580003 C9orf47Q6ZRZ4 202 aa6.85□□□□□ -1.31
SS18-214ENST00000580003 SUGP1Q8IWZ8 645 aaKnown RBP6.85□□□□□ -1.31
SS18-214ENST00000580003 SCAIQ8N9R8 606 aa6.85□□□□□ -1.31
SS18-214ENST00000580003 C9orf106Q8NAJ2 232 aa6.85□□□□□ -1.31
SS18-214ENST00000580003 TEFMQ96QE5 360 aaKnown RBP6.85□□□□□ -1.31
SS18-214ENST00000580003 RASSF1Q9NS23 344 aa6.85□□□□□ -1.31
SS18-214ENST00000580003 CDH22Q9UJ99 828 aa6.85□□□□□ -1.31
SS18-214ENST00000580003 SUFUQ9UMX1 484 aa6.85□□□□□ -1.31
SS18-214ENST00000580003 PIP5K1CO60331 668 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 PGGT1BP53609 377 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 ODF3L2Q3SX64 289 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 CBWD5Q5RIA9 395 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 LDHAL6AQ6ZMR3 332 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms