RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CLDN2P57739 230 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 ADIGQ0VDE8 80 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 SKIDA1Q1XH10 827 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 DEFB133Q30KQ1 61 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 FAM133BQ5BKY9 247 aaKnown RBP11.41□□□□□ -0.58
VPS53-207ENST00000570510 FSCBQ5H9T9 825 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 CEP135Q66GS9 1140 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 FAM173BQ6P4H8 233 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 RAB11FIP2Q7L804 512 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 TTC39CQ8N584 583 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 TMEM145Q8NBT3 493 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 ZNF548Q8NEK5 533 aaPredicted RBP11.41□□□□□ -0.58
VPS53-207ENST00000570510 ZNF564Q8TBZ8 553 aaPredicted RBP11.41□□□□□ -0.58
VPS53-207ENST00000570510 LMX1AQ8TE12 382 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 SRRTQ9BXP5 876 aaKnown RBP11.41□□□□□ -0.58
VPS53-207ENST00000570510 EPN3Q9H201 632 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 SALL4Q9UJQ4 1053 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 PCDHGA7Q9Y5G6 932 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 PCDHGA4Q9Y5G9 962 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 U3KQA8 63 aa11.41□□□□□ -0.58
VPS53-207ENST00000570510 A0A087X0B3 334 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 PVALEFA0A1B0GWK0 134 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 A0A1W2PQ27 194 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 A0A1W2PQ64 194 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 YJEFN3A6XGL0 299 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 C10orf142B7Z368 130 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 E7ENQ6 273 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 AQP9O43315 295 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 LUC7L3O95232 432 aaKnown RBP11.4□□□□□ -0.58
VPS53-207ENST00000570510 PRR29P0C7W0 189 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 LCP1P13796 627 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 VAV1P15498 845 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 UGT1A5P35504 534 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 ME1P48163 572 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 CYP4F2P78329 520 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 E2F4Q16254 413 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 AGBL4Q5VU57 503 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 RESP18Q5W5W9 173 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 OR6B2Q6IFH4 312 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 ESRP1Q6NXG1 681 aaKnown RBP11.4□□□□□ -0.58
VPS53-207ENST00000570510 NEK5Q6P3R8 708 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 PARGQ86W56 976 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 HORMAD1Q86X24 394 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 APCDD1Q8J025 514 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 TMC2Q8TDI7 906 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 LIN37Q96GY3 246 aaPredicted RBP11.4□□□□□ -0.58
VPS53-207ENST00000570510 PSMG3-AS1Q96PY0 264 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 PPP1R9BQ96SB3 815 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 CCDC3Q9BQI4 270 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 ADNPQ9H2P0 1102 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 MMRN2Q9H8L6 949 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 SLC25A13Q9UJS0 675 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 SARDHQ9UL12 918 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 PCDHA7Q9UN72 937 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 CSNK1G3Q9Y6M4 447 aa11.4□□□□□ -0.58
VPS53-207ENST00000570510 LRRK2Q5S007 2527 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 KPNA3O00505 521 aaPredicted RBP11.39□□□□□ -0.59
VPS53-207ENST00000570510 XPO1O14980 1071 aaKnown RBP11.39□□□□□ -0.59
VPS53-207ENST00000570510 MOCS2O96007 188 aaPredicted RBP11.39□□□□□ -0.59
VPS53-207ENST00000570510 CSF2P04141 144 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 JUNDP17535 347 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 NOS2P35228 1153 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 FOXK1P85037 733 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 DNM1Q05193 864 aaKnown RBP11.39□□□□□ -0.59
VPS53-207ENST00000570510 BST2Q10589 180 aaKnown RBP11.39□□□□□ -0.59
VPS53-207ENST00000570510 SRSF6Q13247 344 aaKnown RBP11.39□□□□□ -0.59
VPS53-207ENST00000570510 SLC12A1Q13621 1099 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 MORC3Q14149 939 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 GOLGA7BQ2TAP0 167 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 BORAQ6PGQ7 559 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 UNC13DQ70J99 1090 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 VASH2Q86V25 355 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 LGI2Q8N0V4 545 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 AZIN2Q96A70 460 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 DHX58Q96C10 678 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 LMLNQ96KR4 655 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 SPATA32Q96LK8 384 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 CCDC114Q96M63 670 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 PRICKLE1Q96MT3 831 aaPredicted RBP11.39□□□□□ -0.59
VPS53-207ENST00000570510 GFM1Q96RP9 751 aaKnown RBP11.39□□□□□ -0.59
VPS53-207ENST00000570510 C7orf25Q9BPX7 421 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 PISDQ9UG56 409 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 ANAPC2Q9UJX6 822 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 PPM1HQ9ULR3 514 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 DOLKQ9UPQ8 538 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 FLNCQ14315 2725 aa11.39□□□□□ -0.59
VPS53-207ENST00000570510 CREBBPQ92793 2442 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 TPP1O14773 563 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 MCF2LO15068 1137 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 NOBOXO60393 691 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 ANXA6P08133 673 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 KRT13P13646 458 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 CD19P15391 556 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 NME1P15531 152 aaKnown RBP11.38□□□□□ -0.59
VPS53-207ENST00000570510 PDGFRAP16234 1089 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 CASRP41180 1078 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 GCLMP48507 274 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 VAMP7P51809 220 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 DRAP1Q14919 205 aaPredicted RBP11.38□□□□□ -0.59
VPS53-207ENST00000570510 CLCA4Q14CN2 919 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms