RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 TAS1R2Q8TE23 839 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 FRS2Q8WU20 508 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 FUCA2Q9BTY2 467 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 NUCKS1Q9H1E3 243 aaKnown RBP12.12□□□□□ -0.47
CLK3-222ENST00000568232 LRRC4CQ9HCJ2 640 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 EPB41L5Q9HCM4 733 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 PREBQ9HCU5 417 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 ABCC13Q9NSE7 274 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 DMAC2Q9NW81 257 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 PCDHGA7Q9Y5G6 932 aa12.12□□□□□ -0.47
CLK3-222ENST00000568232 KIF26BQ2KJY2 2108 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 TDRD6O60522 2096 aaKnown RBP12.11□□□□□ -0.47
CLK3-222ENST00000568232 LUC7L3O95232 432 aaKnown RBP12.11□□□□□ -0.47
CLK3-222ENST00000568232 HNRNPA2B1P22626 353 aaKnown RBP12.11□□□□□ -0.47
CLK3-222ENST00000568232 AKT2P31751 481 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 RAD23BP54727 409 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 SPIDRQ14159 915 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 NR0B2Q15466 257 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 E2F4Q16254 413 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 DCAF6Q58WW2 860 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 MS4A13Q5J8X5 152 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 MANEAQ5SRI9 462 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 PIP5KL1Q5T9C9 394 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 PTAR1Q7Z6K3 402 aaPredicted RBP12.11□□□□□ -0.47
CLK3-222ENST00000568232 ABI3BPQ7Z7G0 1075 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 UNC45BQ8IWX7 931 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 IFT43Q96FT9 208 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 TMX3Q96JJ7 454 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 BMFQ96LC9 184 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 IPO9Q96P70 1041 aaKnown RBP12.11□□□□□ -0.47
CLK3-222ENST00000568232 CCDC3Q9BQI4 270 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 BACH2Q9BYV9 841 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 IRX2Q9BZI1 471 aaPredicted RBP12.11□□□□□ -0.47
CLK3-222ENST00000568232 NIF3L1Q9GZT8 377 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 LRRC4Q9HBW1 653 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 CGNQ9P2M7 1197 aaKnown RBP12.11□□□□□ -0.47
CLK3-222ENST00000568232 PPM1HQ9ULR3 514 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 SRPK3Q9UPE1 567 aa12.11□□□□□ -0.47
CLK3-222ENST00000568232 ZFR2Q9UPR6 939 aaKnown RBP12.11□□□□□ -0.47
CLK3-222ENST00000568232 TYW5A2RUC4 315 aaKnown RBP12.1□□□□□ -0.47
CLK3-222ENST00000568232 POM121BA6NF01 834 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 PIK3R2O00459 728 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 AQP9O43315 295 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 BNIP3LO60238 219 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 CSF2P04141 144 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 LIPCP11150 499 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 NNMTP40261 264 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 CCR10P46092 362 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 TBX4P57082 545 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 GOLGA7BQ2TAP0 167 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 ACCSLQ4AC99 568 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 PPP1R15BQ5SWA1 713 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 TPRG1LQ5T0D9 272 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 FAM46CQ5VWP2 391 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 NUGGCQ68CJ6 796 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 SEL1L3Q68CR1 1132 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 ARHGAP17Q68EM7 881 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 MSANTD2Q6P1R3 559 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 RAB11FIP2Q7L804 512 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 DSG4Q86SJ6 1040 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 HORMAD1Q86X24 394 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 ZFAND4Q86XD8 727 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 CCDC117Q8IWD4 279 aaPredicted RBP12.1□□□□□ -0.47
CLK3-222ENST00000568232 SLC35F3Q8IY50 421 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 UBA3Q8TBC4 463 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 LMX1AQ8TE12 382 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 OR8D1Q8WZ84 308 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 LIN37Q96GY3 246 aaPredicted RBP12.1□□□□□ -0.47
CLK3-222ENST00000568232 PPP1R13BQ96KQ4 1090 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 FOXP3Q9BZS1 431 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 IMPG2Q9BZV3 1241 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 LRRC27Q9C0I9 530 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 BLZF1Q9H2G9 400 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 XPO7Q9UIA9 1087 aaKnown RBP12.1□□□□□ -0.47
CLK3-222ENST00000568232 SALL4Q9UJQ4 1053 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 ACSL6Q9UKU0 697 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 SMC3Q9UQE7 1217 aa12.1□□□□□ -0.47
CLK3-222ENST00000568232 NYNRINQ9P2P1 1898 aaKnown RBP12.1□□□□□ -0.47
CLK3-222ENST00000568232 VPS37CA5D8V6 355 aaPredicted RBP12.09□□□□□ -0.47
CLK3-222ENST00000568232 C1QTNF3-AMACRE9PGA6 284 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 RNF103O00237 685 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 NTN3O00634 580 aaPredicted RBP12.09□□□□□ -0.47
CLK3-222ENST00000568232 IKBKBO14920 756 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 XPO1O14980 1071 aaKnown RBP12.09□□□□□ -0.47
CLK3-222ENST00000568232 CD2BP2O95400 341 aaKnown RBP12.09□□□□□ -0.47
CLK3-222ENST00000568232 MOCS2O96007 188 aaPredicted RBP12.09□□□□□ -0.47
CLK3-222ENST00000568232 TRIM49P0CI25 452 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 TRIM49CP0CI26 452 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 LCP1P13796 627 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 NME1P15531 152 aaKnown RBP12.09□□□□□ -0.47
CLK3-222ENST00000568232 PDGFRAP16234 1089 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 ZNF18P17022 549 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 GCLMP48507 274 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 SLC8A3P57103 927 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 DAOAP59103 153 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 C1orf61Q13536 156 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 MORC3Q14149 939 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 NCAPHQ15003 741 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 Q6ZVU0 165 aa12.09□□□□□ -0.47
CLK3-222ENST00000568232 UNC13DQ70J99 1090 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 643.6 ms