RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ABCB4P21439 1286 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 GNALP38405 381 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 SELENOVP59797 346 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 PLCB4Q15147 1175 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 ASPHD1Q5U4P2 390 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 NFRKBQ6P4R8 1299 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 FAM83HQ6ZRV2 1179 aaPredicted RBP3.15□□□□□ -1.91
VPS35-207ENST00000568191 CREB3L2Q70SY1 520 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 RTL10Q7L3V2 364 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 FOXP4Q8IVH2 680 aaPredicted RBP3.15□□□□□ -1.91
VPS35-207ENST00000568191 ZDHHC23Q8IYP9 409 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 EXD3Q8N9H8 876 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 LRRC57Q8N9N7 239 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 ZNF527Q8NB42 609 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 ENGASEQ8NFI3 743 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 RTP4Q96DX8 246 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 LMLNQ96KR4 655 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 PIGSQ96S52 555 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 RTKNQ9BST9 563 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 NLRC4Q9NPP4 1024 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 HERC5Q9UII4 1024 aaKnown RBP3.15□□□□□ -1.91
VPS35-207ENST00000568191 LRCH1Q9Y2L9 728 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 PKP3Q9Y446 797 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 PCDHA10Q9Y5I2 948 aa3.15□□□□□ -1.91
VPS35-207ENST00000568191 TRBV5-7A0A0A0MS05 114 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 TCRBV7S3A2A0A539 114 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 RNMTO43148 476 aaKnown RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 PRC1O43663 620 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 PLIN1O60240 522 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 LDB3O75112 727 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 LCATP04180 440 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 FCGR1AP12314 374 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 NAGAP17050 411 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 RFC1P35251 1148 aaPredicted RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 SKIV2L2P42285 1042 aaKnown RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 CDH12P55289 794 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 KRTAP10-7P60409 375 aaPredicted RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 SEC61A1P61619 476 aaKnown RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 RHAGQ02094 409 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 SPARCL1Q14515 664 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 SLC39A14Q15043 492 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 DUSP6Q16828 381 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 TRIM60Q495X7 471 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 ZNF628Q5EBL2 1059 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 IL31Q6EBC2 164 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 C8orf82Q6P1X6 216 aaPredicted RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 SPSB3Q6PJ21 355 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 KLHL17Q6TDP4 642 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 ZNF367Q7RTV3 350 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 FJX1Q86VR8 437 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 HORMAD2Q8N7B1 307 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 KDM1BQ8NB78 822 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 FAM110DQ8TAY7 271 aaPredicted RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 FAM71BQ8TC56 605 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 CLEC4CQ8WTT0 213 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 FAM216AQ8WUB2 273 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 DNASE2BQ8WZ79 361 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 SGCZQ96LD1 299 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 CADM1Q9BY67 442 aaKnown RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 POLDIP3Q9BY77 421 aaKnown RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 IL21RQ9HBE5 538 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 CHST12Q9NRB3 414 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 ZDHHC7Q9NXF8 308 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 NDUFAF4Q9P032 175 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 IGSF9Q9P2J2 1179 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 C19orf53Q9UNZ5 99 aaPredicted RBP3.14□□□□□ -1.91
VPS35-207ENST00000568191 DHDHQ9UQ10 334 aa3.14□□□□□ -1.91
VPS35-207ENST00000568191 AGAP5A6NIR3 686 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 SEPT4O43236 478 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 ITM2AO43736 263 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 KCNJ13O60928 360 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 SKAP2O75563 359 aaPredicted RBP3.13□□□□□ -1.91
VPS35-207ENST00000568191 CAMTA2O94983 1202 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 IGKV3-20P01619 116 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 TFRCP02786 760 aaKnown RBP3.13□□□□□ -1.91
VPS35-207ENST00000568191 IFIT2P09913 472 aaKnown RBP3.13□□□□□ -1.91
VPS35-207ENST00000568191 PEPDP12955 493 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 UNGP13051 313 aaPredicted RBP3.13□□□□□ -1.91
VPS35-207ENST00000568191 PRKCHP24723 683 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 COMPP49747 757 aaPredicted RBP3.13□□□□□ -1.91
VPS35-207ENST00000568191 CLCNKBP51801 687 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 RPS6KA3P51812 740 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 NEK3P51956 506 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 NUDT6P53370 316 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 TMPRSS3P57727 454 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 CDK18Q07002 472 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 PTK2BQ14289 1009 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 BTBD16Q32M84 506 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 EFHC1Q5JVL4 640 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 CCSAPQ6IQ19 270 aaPredicted RBP3.13□□□□□ -1.91
VPS35-207ENST00000568191 AADACL2Q6P093 401 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 H1FNTQ75WM6 255 aaPredicted RBP3.13□□□□□ -1.91
VPS35-207ENST00000568191 MON1BQ7L1V2 547 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 TMEM217Q8N7C4 229 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 TMEM163Q8TC26 289 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 KCNJ9Q92806 393 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 EID2BQ96D98 161 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 FRG2BQ96QU4 278 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 MECRQ9BV79 373 aa3.13□□□□□ -1.91
VPS35-207ENST00000568191 ELAC1Q9H777 363 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms