RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 INAVAQ3KP66 663 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 ALFQ53S48 1182 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 ZNF683Q8IZ20 524 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 NAA15Q9BXJ9 866 aaKnown RBP16.51■□□□□ 0.23
CLN3-229ENST00000567963 MUC3BQ9H195 1237 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 DACH1Q9UI36 760 aa16.51■□□□□ 0.23
CLN3-229ENST00000567963 TLR4O00206 839 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 ALOX15BO15296 676 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 F9P00740 461 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 SCNN1AP37088 669 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 SULT1E1P49888 294 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 DEUP1Q05D60 604 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 SHBQ15464 509 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 SLC25A52Q3SY17 297 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 Q6ZVU0 165 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 PRPF39Q86UA1 669 aaKnown RBP16.5■□□□□ 0.23
CLN3-229ENST00000567963 ERICH1Q86X53 443 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 XYLT1Q86Y38 959 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 GATAD2AQ86YP4 633 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 GALNT15Q8N3T1 639 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 SAP25Q8TEE9 199 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 C1orf74Q96LT6 269 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 CCDC86Q9H6F5 360 aaKnown RBP16.5■□□□□ 0.23
CLN3-229ENST00000567963 GDF3Q9NR23 364 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 SAMSN1Q9NSI8 373 aaKnown RBP16.5■□□□□ 0.23
CLN3-229ENST00000567963 TMEM51Q9NW97 253 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 HS3ST2Q9Y278 367 aa16.5■□□□□ 0.23
CLN3-229ENST00000567963 DRGXA6NNA5 263 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 C1QTNF3-AMACRE9PGA6 284 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 PES1O00541 588 aaKnown RBP16.49■□□□□ 0.23
CLN3-229ENST00000567963 MT-CO1P00395 513 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 SRCP12931 536 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 UCHL3P15374 230 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 ZNF18P17022 549 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 KRT83P78385 493 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 CNTN1Q12860 1018 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 POM121L1PQ3SYA9 428 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 SLC45A4Q5BKX6 768 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 FAM102AQ5T9C2 384 aaPredicted RBP16.49■□□□□ 0.23
CLN3-229ENST00000567963 AGBL4Q5VU57 503 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 TAF3Q5VWG9 929 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 SETD3Q86TU7 594 aaPredicted RBP16.49■□□□□ 0.23
CLN3-229ENST00000567963 PIP4K2CQ8TBX8 421 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 TBCBQ99426 244 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 PSMB7Q99436 277 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 FTSJ1Q9UET6 329 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 PAXBP1Q9Y5B6 917 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 SNX10Q9Y5X0 201 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 NBEAQ8NFP9 2946 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 DOCK9Q9BZ29 2069 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 PKD1L2Q7Z442 2459 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 FAM208BQ5VWN6 2430 aa16.49■□□□□ 0.23
CLN3-229ENST00000567963 COL5A1P20908 1838 aaPredicted RBP16.49■□□□□ 0.23
CLN3-229ENST00000567963 YKT6O15498 198 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 BNIP3LO60238 219 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 ITGAVP06756 1048 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 RHOCP08134 193 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 MAT2AP31153 395 aaKnown RBP16.48■□□□□ 0.23
CLN3-229ENST00000567963 NXPH1P58417 271 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 SMAD1Q15797 465 aaKnown RBP16.48■□□□□ 0.23
CLN3-229ENST00000567963 C2CD6Q53TS8 623 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 TCP11X2Q5H9J9 407 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 CT47A1Q5JQC4 288 aaPredicted RBP16.48■□□□□ 0.23
CLN3-229ENST00000567963 ACBD5Q5T8D3 534 aaPredicted RBP16.48■□□□□ 0.23
CLN3-229ENST00000567963 NAPEPLDQ6IQ20 393 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 LRRC31Q6UY01 552 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 TRIM69Q86WT6 500 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 MFSD2AQ8NA29 543 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 ATP11CQ8NB49 1132 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 MDM1Q8TC05 714 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 C2orf49Q9BVC5 232 aaPredicted RBP16.48■□□□□ 0.23
CLN3-229ENST00000567963 STK33Q9BYT3 514 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 NUP62CLQ9H1M0 184 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 ERVMER34-1Q9H9K5 563 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 TMPRSS4Q9NRS4 437 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 IGLV3-10A0A075B6K4 115 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 A0A0D9SEW6 157 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 FAM170AA1A519 330 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 SNAP91O60641 907 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 LSM8O95777 96 aaKnown RBP16.48■□□□□ 0.23
CLN3-229ENST00000567963 CTSLP07711 333 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 NUDT1P36639 197 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 FLT3P36888 993 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 ARRB1P49407 418 aaPredicted RBP16.48■□□□□ 0.23
CLN3-229ENST00000567963 ARTNQ5T4W7 220 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 BNIPLQ7Z465 357 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 NOP9Q86U38 636 aaKnown RBP16.48■□□□□ 0.23
CLN3-229ENST00000567963 MARCH9Q86YJ5 346 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 OR2A12Q8NGT7 310 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 CPA5Q8WXQ8 436 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 MPP6Q9NZW5 540 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 VPS51Q9UID3 782 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 TMEM59LQ9UK28 342 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 DMTF1Q9Y222 760 aa16.48■□□□□ 0.23
CLN3-229ENST00000567963 FARP1Q9Y4F1 1045 aaPredicted RBP16.48■□□□□ 0.23
CLN3-229ENST00000567963 DOCK4Q8N1I0 1966 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 E9PAM4 449 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 F8VZ95 297 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 K7ERQ8 282 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 MMEP08473 750 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms