RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SNAP91O60641 907 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 MT-CO1P00395 513 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 IGHV4-34P06331 123 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3HP0C7X1 549 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 ADRA1BP35368 520 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 SHC2P98077 582 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 PTP4A2Q12974 167 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 RAB6CQ53S08 254 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3GQ6DHY5 549 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3CQ6IPX1 549 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 Q6ZVU0 165 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 ADAT2Q7Z6V5 191 aaKnown RBP21.26■□□□□ 0.99
CLN3-219ENST00000565778 TBC1D3Q8IZP1 549 aaPredicted RBP21.26■□□□□ 0.99
CLN3-219ENST00000565778 CAMK1GQ96NX5 476 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 PSMB7Q99436 277 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 BPIFA3Q9BQP9 254 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 ZYG11BQ9C0D3 744 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 RAB6CQ9H0N0 254 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 ANKRD6Q9Y2G4 727 aa21.26■□□□□ 0.99
CLN3-219ENST00000565778 PCDH15Q96QU1 1955 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 C2CD4BA6NLJ0 364 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 MCF2LO15068 1137 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 CALB1P05937 261 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 SRCP12931 536 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 FERP16591 822 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 RFC1P35251 1148 aaPredicted RBP21.25■□□□□ 0.99
CLN3-219ENST00000565778 HNRNPDQ14103 355 aaKnown RBP21.25■□□□□ 0.99
CLN3-219ENST00000565778 KIF19Q2TAC6 998 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 FILIP1LQ4L180 1135 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 PHF13Q86YI8 300 aaPredicted RBP21.25■□□□□ 0.99
CLN3-219ENST00000565778 RTN4Q9NQC3 1192 aaKnown RBP21.25■□□□□ 0.99
CLN3-219ENST00000565778 TM7SF3Q9NS93 570 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 OR12D3Q9UGF7 316 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 VPS51Q9UID3 782 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 SARDHQ9UL12 918 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 SNX11Q9Y5W9 270 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 ASCC3Q8N3C0 2202 aaKnown RBP21.25■□□□□ 0.99
CLN3-219ENST00000565778 NUMA1Q14980 2115 aa21.25■□□□□ 0.99
CLN3-219ENST00000565778 A0A1W2PPC4 97 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 ILVBLA1L0T0 632 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 C1QTNF3-AMACRE9PGA6 284 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 K7ERQ8 282 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 PLK4O00444 970 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 KCNK3O14649 394 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 PTPN9P43378 593 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 GRIA4P48058 902 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 ZNF165P49910 485 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 METAP1P53582 386 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 POM121L1PQ3SYA9 428 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 LINGO4Q6UY18 593 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 STRADAQ7RTN6 431 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 NAXDQ8IW45 347 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 OR7D4Q8NG98 312 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 SETD7Q8WTS6 366 aaKnown RBP21.24■□□□□ 0.99
CLN3-219ENST00000565778 CCDC114Q96M63 670 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 PPARGC1AQ9UBK2 798 aaKnown RBP21.24■□□□□ 0.99
CLN3-219ENST00000565778 PPM1HQ9ULR3 514 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 HS3ST2Q9Y278 367 aa21.24■□□□□ 0.99
CLN3-219ENST00000565778 CBX4O00257 560 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 ALOX15BO15296 676 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 TNFAIP3P21580 790 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 RRM1P23921 792 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 DRD3P35462 400 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 CCR5P51681 352 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 ADPRHP54922 357 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 C21orf59P57076 290 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 RACK1P63244 317 aaKnown RBP21.23■□□□□ 0.99
CLN3-219ENST00000565778 FAM193AP78312 1265 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 TRIP6Q15654 476 aaKnown RBP21.23■□□□□ 0.99
CLN3-219ENST00000565778 RWDD4Q6NW29 188 aaKnown RBP21.23■□□□□ 0.99
CLN3-219ENST00000565778 WDR59Q6PJI9 974 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 LAYNQ6UX15 382 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 DRC7Q8IY82 874 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 DCAF4L2Q8NA75 395 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 PIP4K2CQ8TBX8 421 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 FAM172AQ8WUF8 416 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 SKA1Q96BD8 255 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 ORAI3Q9BRQ5 295 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 OSBPL2Q9H1P3 480 aa21.23■□□□□ 0.99
CLN3-219ENST00000565778 FNDC3AQ9Y2H6 1198 aaKnown RBP21.23■□□□□ 0.99
CLN3-219ENST00000565778 ANKRD62A6NC57 917 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 SIGLEC16A6NMB1 481 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 RTN2O75298 545 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 TOP3BO95985 862 aaKnown RBP21.22■□□□□ 0.99
CLN3-219ENST00000565778 ZNF883P0CG24 379 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 SPINK2P20155 84 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 GPD1P21695 349 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 GLDCP23378 1020 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 C1QBPQ07021 282 aaKnown RBP21.22■□□□□ 0.99
CLN3-219ENST00000565778 SUZ12Q15022 739 aaKnown RBP21.22■□□□□ 0.99
CLN3-219ENST00000565778 ARTNQ5T4W7 220 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 ACAD10Q6JQN1 1059 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 RETSATQ6NUM9 610 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 ZNF783Q6ZMS7 281 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 IRF2BP2Q7Z5L9 587 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 C3orf20Q8ND61 904 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 CENPIQ92674 756 aaPredicted RBP21.22■□□□□ 0.99
CLN3-219ENST00000565778 ACE2Q9BYF1 805 aaPredicted RBP21.22■□□□□ 0.99
CLN3-219ENST00000565778 EBF2Q9HAK2 575 aa21.22■□□□□ 0.99
CLN3-219ENST00000565778 ATP13A1Q9HD20 1204 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms