RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TFAP2DQ7Z6R9 452 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 CHPFQ8IZ52 775 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 PYROXD2Q8N2H3 581 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 TXLNBQ8N3L3 684 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 TXNDC5Q8NBS9 432 aaKnown RBP17.71■□□□□ 0.43
CLN3-217ENST00000565354 CCDC112Q8NEF3 446 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 MDGA1Q8NFP4 955 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 MUC3BQ9H195 1237 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 SLC32A1Q9H598 525 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 ZWILCHQ9H900 591 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 ZDHHC4Q9NPG8 344 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 MMP17Q9ULZ9 603 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 MSRB2Q9Y3D2 182 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 STARD13Q9Y3M8 1113 aa17.71■□□□□ 0.43
CLN3-217ENST00000565354 MYO18AQ92614 2054 aaKnown RBP17.71■□□□□ 0.43
CLN3-217ENST00000565354 CEP192Q8TEP8 1941 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 ADAMTS9Q9P2N4 1935 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 IGLV3-10A0A075B6K4 115 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 NPC1O15118 1278 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 DAPK3O43293 454 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 LRIG2O94898 1065 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 PROSCO94903 275 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 EPHB2P29323 1055 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 OR1E1P30953 314 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 L1CAMP32004 1257 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 GJC1P36383 396 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 CSKP41240 450 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 WASP42768 502 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 NAP1L1P55209 391 aaKnown RBP17.7■□□□□ 0.42
CLN3-217ENST00000565354 TPI1P60174 286 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 BOLA3Q53S33 107 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 TRIM61Q5EBN2 209 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 FSCBQ5H9T9 825 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 PITRM1Q5JRX3 1037 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 ZFYVE27Q5T4F4 411 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 RNF219Q5W0B1 726 aaPredicted RBP17.7■□□□□ 0.42
CLN3-217ENST00000565354 ZNF683Q8IZ20 524 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 ARFGAP1Q8N6T3 406 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 IL17RCQ8NAC3 791 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 ACRBPQ8NEB7 543 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 HSPH1Q92598 858 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 PEBP4Q96S96 227 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 NUSAP1Q9BXS6 441 aaKnown RBP17.7■□□□□ 0.42
CLN3-217ENST00000565354 CATSPERBQ9H7T0 1116 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 PLA2G4CQ9UP65 541 aa17.7■□□□□ 0.42
CLN3-217ENST00000565354 ANTXRLA6NF34 631 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 FAM72CH0Y354 149 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 EEF2KO00418 725 aaKnown RBP17.69■□□□□ 0.42
CLN3-217ENST00000565354 ZBTB24O43167 697 aaPredicted RBP17.69■□□□□ 0.42
CLN3-217ENST00000565354 ASLP04424 464 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 RHOQP17081 205 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 NTSR1P30989 418 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 ARHGAP25P42331 645 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 ST8SIA6P61647 398 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 CRY1Q16526 586 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 SMTNL2Q2TAL5 461 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 FUT11Q495W5 492 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 FNDC3BQ53EP0 1204 aaKnown RBP17.69■□□□□ 0.42
CLN3-217ENST00000565354 PPP6R3Q5H9R7 873 aaPredicted RBP17.69■□□□□ 0.42
CLN3-217ENST00000565354 FAM72AQ5TYM5 149 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 FAM72DQ6L9T8 149 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 SETD3Q86TU7 594 aaPredicted RBP17.69■□□□□ 0.42
CLN3-217ENST00000565354 FAM72BQ86X60 149 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 TMEM139Q8IV31 216 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 PSTKQ8IV42 348 aaKnown RBP17.69■□□□□ 0.42
CLN3-217ENST00000565354 MAGEB5Q9BZ81 275 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 VPS28Q9UK41 221 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 KLK13Q9UKR3 277 aa17.69■□□□□ 0.42
CLN3-217ENST00000565354 GCN1Q92616 2671 aaKnown RBP17.69■□□□□ 0.42
CLN3-217ENST00000565354 ADAMTS20P59510 1910 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 MTA2O94776 668 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 HOXB2P14652 356 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 MZF1P28698 734 aaPredicted RBP17.68■□□□□ 0.42
CLN3-217ENST00000565354 MAN1A1P33908 653 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 HTR7P34969 479 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 MAPK8P45983 427 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 NUMBP49757 651 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 KRT81Q14533 505 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 PLEKHG6Q3KR16 790 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 KCNT1Q5JUK3 1230 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 MANEALQ5VSG8 457 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 TMEM215Q68D42 235 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 CXorf57Q6NSI4 855 aaKnown RBP17.68■□□□□ 0.42
CLN3-217ENST00000565354 SERPINA13PQ6UXR4 307 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 IGSF10Q6WRI0 2623 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 LPCAT2Q7L5N7 544 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 KIAA0907Q7Z7F0 614 aaPredicted RBP17.68■□□□□ 0.42
CLN3-217ENST00000565354 PIP4P1Q86T03 277 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 ADIPOR2Q86V24 386 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 SYT12Q8IV01 421 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 CYB5D2Q8WUJ1 264 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 SORCS1Q8WY21 1168 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 RETREG1Q9H6L5 497 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 POLMQ9NP87 494 aaPredicted RBP17.68■□□□□ 0.42
CLN3-217ENST00000565354 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.68■□□□□ 0.42
CLN3-217ENST00000565354 CACNA2D2Q9NY47 1150 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 THAP10Q9P2Z0 257 aaPredicted RBP17.68■□□□□ 0.42
CLN3-217ENST00000565354 STON1Q9Y6Q2 735 aa17.68■□□□□ 0.42
CLN3-217ENST00000565354 SMG1Q96Q15 3661 aaKnown RBP17.68■□□□□ 0.42
CLN3-217ENST00000565354 UPK3BL1B0FP48 263 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms