RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 RGS7P49802 495 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 CLDN2P57739 230 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 TLE1Q04724 770 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 SULT2A1Q06520 285 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 UBAP2LQ14157 1087 aaKnown RBP7.54□□□□□ -1.2
VPS4A-203ENST00000564399 KRT39Q6A163 491 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 OR6B2Q6IFH4 312 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 ZCCHC8Q6NZY4 707 aaKnown RBP7.54□□□□□ -1.2
VPS4A-203ENST00000564399 GUSBP11Q6P575 273 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 SHC4Q6S5L8 630 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 Q6ZSR6 202 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 PTAR1Q7Z6K3 402 aaPredicted RBP7.54□□□□□ -1.2
VPS4A-203ENST00000564399 CLEC14AQ86T13 490 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 HORMAD1Q86X24 394 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 CHSY1Q86X52 802 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 FAM186BQ8IYM0 893 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 GRAMD1CQ8IYS0 662 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 CEP57L1Q8IYX8 460 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 TMEM145Q8NBT3 493 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 KIAA0895Q8NCT3 520 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 TMEM174Q8WUU8 243 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 KCTD13Q8WZ19 329 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 SEMA4DQ92854 862 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 FAM131CQ96AQ9 280 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 IFT43Q96FT9 208 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 FCRL2Q96LA5 508 aaPredicted RBP7.54□□□□□ -1.2
VPS4A-203ENST00000564399 NOX5Q96PH1 765 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 KCTD10Q9H3F6 313 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 TMEM8AQ9HCN3 771 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 PPP4R2Q9NY27 417 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 NCKIPSDQ9NZQ3 722 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 IPO11Q9UI26 975 aaKnown RBP7.54□□□□□ -1.2
VPS4A-203ENST00000564399 TEP1Q99973 2627 aaKnown RBP7.54□□□□□ -1.2
VPS4A-203ENST00000564399 BOD1L1Q8NFC6 3051 aa7.54□□□□□ -1.2
VPS4A-203ENST00000564399 COL27A1Q8IZC6 1860 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 ZFC3H1O60293 1989 aaKnown RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 EME2A4GXA9 379 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 A6NNZ2 444 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 H3BM21 787 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 KPNA3O00505 521 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 MUSKO15146 869 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 MAPK13O15264 365 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 KLRC4O43908 158 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 PPP6R2O75170 966 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 PPFIA2O75334 1257 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 TCEA3O75764 348 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 APOEP02649 317 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 ITGB2P05107 769 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 ITGA2BP08514 1039 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 SETSIPP0DME0 302 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 ITGB6P18564 788 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 TACR2P21452 398 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 NR2F2P24468 414 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 SLC5A2P31639 672 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 TAS2R38P59533 333 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 CCDC15Q0P6D6 951 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 SLC12A1Q13621 1099 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 SPIDRQ14159 915 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 DRAP1Q14919 205 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 NR0B2Q15466 257 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 TGIF1Q15583 401 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 DLG2Q15700 870 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 ZNF284Q2VY69 593 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 DEFB133Q30KQ1 61 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 RAP1GAP2Q684P5 730 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 NEK5Q6P3R8 708 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 Q6ZVU0 165 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 C14orf80Q86SX3 495 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 DCP2Q8IU60 420 aaKnown RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 SCML4Q8N228 414 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 FBXL13Q8NEE6 735 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 ZNF548Q8NEK5 533 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 LMX1AQ8TE12 382 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 FRS2Q8WU20 508 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 IRGQQ8WZA9 623 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 RNF34Q969K3 372 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 FAXDC2Q96IV6 333 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 ZNF396Q96N95 335 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 SERPINB11Q96P15 392 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 PPP1R9BQ96SB3 815 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 IL12RB2Q99665 862 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 ZSCAN16Q9H4T2 348 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 DYRK4Q9NR20 520 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 RAB20Q9NX57 234 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 FAM13BQ9NYF5 915 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 SLC25A13Q9UJS0 675 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 PPM1HQ9ULR3 514 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 TLR6Q9Y2C9 796 aa7.53□□□□□ -1.2
VPS4A-203ENST00000564399 FARP1Q9Y4F1 1045 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-203ENST00000564399 SCN8AQ9UQD0 1980 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 F5H5T6 163 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 RIOK3O14730 519 aaKnown RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 PLD2O14939 933 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 MCF2LO15068 1137 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 ALOX15BO15296 676 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 AQP9O43315 295 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 VDRP11473 427 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 RPL13P26373 211 aaKnown RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 GTF2H1P32780 548 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 PSMC2P35998 433 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms