RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 FBRSL1Q9HCM7 1045 aaKnown RBP16.96■□□□□ 0.31
VPS4A-202ENST00000562754 RBM12Q9NTZ6 932 aaKnown RBP16.96■□□□□ 0.31
VPS4A-202ENST00000562754 IPO11Q9UI26 975 aaKnown RBP16.96■□□□□ 0.31
VPS4A-202ENST00000562754 VPS51Q9UID3 782 aa16.96■□□□□ 0.31
VPS4A-202ENST00000562754 GOLGA6L10A0A0M3HER8 536 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.95■□□□□ 0.3
VPS4A-202ENST00000562754 H7C0C1 242 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 J3KR12 359 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 PPP1R12AO14974 1030 aaPredicted RBP16.95■□□□□ 0.3
VPS4A-202ENST00000562754 NCAM2O15394 837 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 KDELR3O43731 214 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 PRAMEF11O60813 436 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 ATP5OP48047 213 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 ARF5P84085 180 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 C2orf54Q08AI8 447 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 DMC1Q14565 340 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 SLC45A4Q5BKX6 768 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 FAM182AQ5T1J6 154 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 MBLAC2Q68D91 279 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 BZW1Q7L1Q6 419 aaKnown RBP16.95■□□□□ 0.3
VPS4A-202ENST00000562754 RALGPS2Q86X27 583 aaPredicted RBP16.95■□□□□ 0.3
VPS4A-202ENST00000562754 ZNF354CQ86Y25 554 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 AHI1Q8N157 1196 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 TSGA13Q96PP4 275 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 PNKPQ96T60 521 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 C8orf33Q9H7E9 229 aaPredicted RBP16.95■□□□□ 0.3
VPS4A-202ENST00000562754 SP110Q9HB58 689 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 ACTL7AQ9Y615 435 aa16.95■□□□□ 0.3
VPS4A-202ENST00000562754 HACD1B0YJ81 288 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 PRRT4C9JH25 899 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 CBX4O00257 560 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 PEX11BO96011 259 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 CTSOP43234 321 aaPredicted RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 IL10RBQ08334 325 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 BYSLQ13895 437 aaKnown RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 DRICH1Q6PGQ1 229 aaPredicted RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 LEKR1Q6ZMV7 388 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 LRRC49Q8IUZ0 686 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 CDKL3Q8IVW4 592 aaPredicted RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 CCDC13Q8IYE1 715 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 GJD3Q8N144 294 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 CCNYQ8ND76 341 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 SPATA4Q8NEY3 305 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 TFB1MQ8WVM0 346 aaKnown RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 EZH1Q92800 747 aaPredicted RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 MAGOHBQ96A72 148 aaKnown RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 TTC17Q96AE7 1141 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 ZNF419Q96HQ0 510 aaPredicted RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 P2RY13Q9BPV8 354 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 C2orf49Q9BVC5 232 aaPredicted RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 BRD8Q9H0E9 1235 aa16.94■□□□□ 0.3
VPS4A-202ENST00000562754 DDX47Q9H0S4 455 aaKnown RBP16.94■□□□□ 0.3
VPS4A-202ENST00000562754 BCLAF3A2AJT9 711 aaKnown RBP16.93■□□□□ 0.3
VPS4A-202ENST00000562754 ANTXRLA6NF34 631 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 KAT7O95251 611 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 CD160O95971 181 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 GLULP15104 373 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 CCNCP24863 283 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 RBL1P28749 1068 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 COILP38432 576 aaPredicted RBP16.93■□□□□ 0.3
VPS4A-202ENST00000562754 KCNJ1P48048 391 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 GALK1P51570 392 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 CLCN6P51797 869 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 AP1B1Q10567 949 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 PON2Q15165 354 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 MLF2Q15773 248 aaPredicted RBP16.93■□□□□ 0.3
VPS4A-202ENST00000562754 SLC44A4Q53GD3 710 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 DARS2Q6PI48 645 aaKnown RBP16.93■□□□□ 0.3
VPS4A-202ENST00000562754 LINGO4Q6UY18 593 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 TPRG1Q6ZUI0 275 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.93■□□□□ 0.3
VPS4A-202ENST00000562754 SORCS1Q8WY21 1168 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 MAML1Q92585 1016 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 TMEM121Q9BTD3 319 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 USP29Q9HBJ7 922 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 HOMER3Q9NSC5 361 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 MUTYHQ9UIF7 546 aa16.93■□□□□ 0.3
VPS4A-202ENST00000562754 CCDC188H7C350 402 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 KCNK1O00180 336 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 APODP05090 189 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 ITGAVP06756 1048 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 CHRM1P11229 460 aaPredicted RBP16.92■□□□□ 0.3
VPS4A-202ENST00000562754 GRIA2P42262 883 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 FNTAP49354 379 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 STK19P49842 368 aaPredicted RBP16.92■□□□□ 0.3
VPS4A-202ENST00000562754 NRLP54845 237 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 GDF10P55107 478 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 ZNF33AQ06730 810 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 ZBTB17Q13105 803 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 KCTD19Q17RG1 926 aaPredicted RBP16.92■□□□□ 0.3
VPS4A-202ENST00000562754 TMEM196Q5HYL7 178 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 TJAP1Q5JTD0 557 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 FSTL4Q6MZW2 842 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 KLHL7Q8IXQ5 586 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 LRRN4CLQ8ND94 238 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 CYB5D2Q8WUJ1 264 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 FATE1Q969F0 183 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 ACDQ96AP0 544 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 MSANTD3Q96H12 275 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 CARD6Q9BX69 1037 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms