RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 KIAA0754O94854 1291 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 FTCDO95954 541 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 KRT14P02533 472 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 NUDT17P0C025 328 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 GOLGA8HP0CJ92 632 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 GHRP10912 638 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 UCHL3P15374 230 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 SCP2P22307 547 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 GATA3P23771 443 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 CYP3A7P24462 503 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 MT3P25713 68 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 KRTAP5-9P26371 169 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 RFC4P35249 363 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 HSD17B3P37058 310 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 USP8P40818 1118 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 MDH1P40925 334 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 MMP14P50281 582 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 SLC12A3P55017 1021 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 MANFP55145 182 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 LGALS4P56470 323 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 GSCP56915 257 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 NXPH1P58417 271 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 POLR2FP61218 127 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 POU5F1Q01860 360 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 OCRLQ01968 901 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 GUCY2DQ02846 1103 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 PPATQ06203 517 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 ACTN3Q08043 901 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 ZNF844Q08AG5 666 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 KLHL30Q0D2K2 578 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 BYSLQ13895 437 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 SLC15A2Q16348 729 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 CDC37Q16543 378 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 UBE2SQ16763 222 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 KIAA0753Q2KHM9 967 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 SLC4A8Q2Y0W8 1093 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 LACTB2Q53H82 288 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 C2orf27AQ580R0 203 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 DCAF12L1Q5VU92 463 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 ZNF66Q6ZN08 573 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 ZNF571Q7Z3V5 609 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 IRF2BP2Q7Z5L9 587 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 RPAINQ86UA6 219 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 NT5DC3Q86UY8 548 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 GPBP1Q86WP2 473 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 NBPF5PQ86XG9 351 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 FMNL3Q8IVF7 1028 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 TEX11Q8IYF3 940 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 METTL13Q8N6R0 699 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 FAM133AQ8N9E0 248 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 Q8NA96 180 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 ETNPPLQ8TBG4 499 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 TBC1D22AQ8WUA7 517 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 CHTF18Q8WVB6 975 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 SCFD1Q8WVM8 642 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 RFFLQ8WZ73 363 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 CUL5Q93034 780 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 SLC35C1Q96A29 364 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 TMEM125Q96AQ2 219 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 COA7Q96BR5 231 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 LRRC45Q96CN5 670 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 CYFIP2Q96F07 1278 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 EEF2KMTQ96G04 330 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 HES6Q96HZ4 224 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 MS4A14Q96JA4 679 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 PSMB7Q99436 277 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 KRT12Q99456 494 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 NCAPGQ9BPX3 1015 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 PACSIN1Q9BY11 444 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 FAM129AQ9BZQ8 928 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 PRSS22Q9GZN4 317 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 SENP6Q9GZR1 1112 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 GLT8D2Q9H1C3 349 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 NEUROG2Q9H2A3 272 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 DHX36Q9H2U1 1008 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 CPVLQ9H3G5 476 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 CCDC134Q9H6E4 229 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 ACTR5Q9H9F9 607 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 JMJD4Q9H9V9 463 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 METTL14Q9HCE5 456 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 NLRC4Q9NPP4 1024 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 OLFML3Q9NRN5 406 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 FAM114A2Q9NRY5 505 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 KLC4Q9NSK0 619 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 TYW1Q9NV66 732 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 PANK4Q9NVE7 773 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 FBXO34Q9NWN3 711 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 THG1LQ9NWX6 298 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 GEMIN8Q9NWZ8 242 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 SNTG2Q9NY99 539 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 SRP68Q9UHB9 627 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 DDX25Q9UHL0 483 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 SAP30BPQ9UHR5 308 aaKnown RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 AJAP1Q9UKB5 411 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 HDAC9Q9UKV0 1011 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 NFU1Q9UMS0 254 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 PACSIN2Q9UNF0 486 aaPredicted RBP2.63□□□□□ -1.99
SPG11-223ENST00000560858 PLAAQ9Y263 795 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 NEU2Q9Y3R4 380 aa2.63□□□□□ -1.99
SPG11-223ENST00000560858 UTP18Q9Y5J1 556 aaKnown RBP eCLIP2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms