RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 NT5C3BQ969T7 300 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 PIWIL1Q96J94 861 aaKnown RBP12.14□□□□□ -0.47
LDLR-212ENST00000560467 CALN1Q9BXU9 219 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 CCSER2Q9H7U1 834 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 PRDM16Q9HAZ2 1276 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 RRAGDQ9NQL2 400 aaPredicted RBP12.14□□□□□ -0.47
LDLR-212ENST00000560467 DONSONQ9NYP3 566 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 CALCOCO1Q9P1Z2 691 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 MYO16Q9Y6X6 1858 aa12.14□□□□□ -0.47
LDLR-212ENST00000560467 E2F8A0AVK6 867 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 HOXC11O43248 304 aaPredicted RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 TLR5O60602 858 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 SRGAP2O75044 1071 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 TULP3O75386 442 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 ENDOD1O94919 500 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 IRF1P10914 325 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 ZFXP17010 805 aaPredicted RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 HARS2P49590 506 aaKnown RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 PEX5P50542 639 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 ATXN3P54252 364 aaPredicted RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 TBX4P57082 545 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 GAD2Q05329 585 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 RING1Q06587 406 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 NNTQ13423 1086 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 BYSLQ13895 437 aaKnown RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 SPDYCQ5MJ68 293 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 SNX30Q5VWJ9 437 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 EGFLAMQ63HQ2 1017 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 NUGGCQ68CJ6 796 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 KLHDC10Q6PID8 442 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 HDDC3Q8N4P3 179 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 ATP6V0D2Q8N8Y2 350 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 ACTRT1Q8TDG2 376 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 DQX1Q8TE96 717 aaKnown RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 DDX50Q9BQ39 737 aaKnown RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 DHX35Q9H5Z1 703 aaKnown RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 CAPN10Q9HC96 672 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.13□□□□□ -0.47
LDLR-212ENST00000560467 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.13□□□□□ -0.47
LDLR-212ENST00000560467 TBC1D14Q9P2M4 693 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 FEZ2Q9UHY8 353 aaPredicted RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 RASAL2Q9UJF2 1139 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 SLC6A14Q9UN76 642 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 LHX6Q9UPM6 363 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 TLR6Q9Y2C9 796 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 MSRB2Q9Y3D2 182 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 HBS1LQ9Y450 684 aaKnown RBP12.13□□□□□ -0.47
LDLR-212ENST00000560467 MRFAP1Q9Y605 127 aa12.13□□□□□ -0.47
LDLR-212ENST00000560467 DSPP15924 2871 aaKnown RBP12.12□□□□□ -0.47
LDLR-212ENST00000560467 THADAQ6YHU6 1953 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 ANAPC1Q9H1A4 1944 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 NUP205Q92621 2012 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 SLC12A8A0AV02 714 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 UPK3BL1B0FP48 263 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 UPK3BL2E5RIL1 263 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 H3BRJ5 948 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 KRIT1O00522 736 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 MDM4O15151 490 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 DDX3YO15523 660 aaKnown RBP12.12□□□□□ -0.47
LDLR-212ENST00000560467 SLU7O95391 586 aaKnown RBP12.12□□□□□ -0.47
LDLR-212ENST00000560467 FGGP02679 453 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 FYNP06241 537 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 SERPINF2P08697 491 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 ZDHHC11BP0C7U3 371 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 RARAP10276 462 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 HOXB2P14652 356 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 ADRA1BP35368 520 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 HOXD12P35452 270 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 DPP6P42658 865 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 SLC11A2P49281 568 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 CXCR3P49682 368 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 PGFP49763 221 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 CDH6P55285 790 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 HDAC4P56524 1084 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 TAS2R40P59535 323 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 ZNF33AQ06730 810 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 DUOXA1Q1HG43 343 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 ANO4Q32M45 955 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 TFDP3Q5H9I0 405 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 PPP6R3Q5H9R7 873 aaPredicted RBP12.12□□□□□ -0.47
LDLR-212ENST00000560467 MSANTD2Q6P1R3 559 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 LRRC31Q6UY01 552 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 BZW1Q7L1Q6 419 aaKnown RBP12.12□□□□□ -0.47
LDLR-212ENST00000560467 TAC4Q86UU9 113 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 FAM131BQ86XD5 332 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 TMEM25Q86YD3 366 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 SLC41A1Q8IVJ1 513 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 CHCHD4Q8N4Q1 142 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 MINDY1Q8N5J2 469 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 TERB1Q8NA31 727 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 ADAM32Q8TC27 787 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 KRT35Q92764 455 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 NTAN1Q96AB6 310 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 RNF25Q96BH1 459 aaPredicted RBP12.12□□□□□ -0.47
LDLR-212ENST00000560467 ACOX2Q99424 681 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 EPAS1Q99814 870 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 NMUR1Q9HB89 426 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 CD93Q9NPY3 652 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 DEC1Q9P2X7 70 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 TTC7AQ9ULT0 858 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms