RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ERCC2P18074 760 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 NDUFV2P19404 249 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 SERPINH1P50454 418 aaKnown RBP13.3□□□□□ -0.28
NEDD8-208ENST00000560427 CDH6P55285 790 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 DMWDQ09019 674 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 KIF5AQ12840 1032 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 ELAVL3Q14576 367 aaKnown RBP13.3□□□□□ -0.28
NEDD8-208ENST00000560427 IFI16Q16666 785 aaKnown RBP13.3□□□□□ -0.28
NEDD8-208ENST00000560427 USP39Q53GS9 565 aaKnown RBP13.3□□□□□ -0.28
NEDD8-208ENST00000560427 HEATR6Q6AI08 1181 aaKnown RBP13.3□□□□□ -0.28
NEDD8-208ENST00000560427 TXNRD3NBQ6F5E7 133 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 LRRC8AQ8IWT6 810 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 RHOT1Q8IXI2 618 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 SH2D3CQ8N5H7 860 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 ACRBPQ8NEB7 543 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 OR7D4Q8NG98 312 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 GAB3Q8WWW8 586 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 PRCCQ92733 491 aaPredicted RBP13.3□□□□□ -0.28
NEDD8-208ENST00000560427 SPACA7Q96KW9 195 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 MRGPRX1Q96LB2 322 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 CCDC114Q96M63 670 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 CSPG4P5Q96PW8 444 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 SPON2Q9BUD6 331 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 TSGA10Q9BZW7 698 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 EPC1Q9H2F5 836 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 LRRC19Q9H756 370 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 SCML1Q9UN30 329 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 CKAP5Q14008 2032 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 ARHGAP42A6NI28 874 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 RASA4BC9J798 803 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 DCLK1O15075 740 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 RASA4O43374 803 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 SPOPO43791 374 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 BUB1BO60566 1050 aaPredicted RBP13.29□□□□□ -0.28
NEDD8-208ENST00000560427 SNAP91O60641 907 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 RNASEH1O60930 286 aaKnown RBP13.29□□□□□ -0.28
NEDD8-208ENST00000560427 RPP40O75818 363 aaKnown RBP13.29□□□□□ -0.28
NEDD8-208ENST00000560427 HLA-EP13747 358 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 COMTP21964 271 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 STK19P49842 368 aaPredicted RBP13.29□□□□□ -0.28
NEDD8-208ENST00000560427 ARSEP51690 589 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 COPAP53621 1224 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 TAS2R40P59535 323 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 ARF5P84085 180 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 SFSWAPQ12872 951 aaKnown RBP13.29□□□□□ -0.28
NEDD8-208ENST00000560427 AFMIDQ63HM1 303 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 ZNF776Q68DI1 518 aaPredicted RBP13.29□□□□□ -0.28
NEDD8-208ENST00000560427 TMCO3Q6UWJ1 677 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 DSG4Q86SJ6 1040 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 TMPRSS6Q8IU80 811 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 PGBD3Q8N328 593 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 ATP11CQ8NB49 1132 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 KCTD6Q8NC69 237 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 FRS2Q8WU20 508 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 FAF2Q96CS3 445 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 RPL10LQ96L21 214 aaKnown RBP13.29□□□□□ -0.28
NEDD8-208ENST00000560427 NOL6Q9H6R4 1146 aaKnown RBP13.29□□□□□ -0.28
NEDD8-208ENST00000560427 PRDM16Q9HAZ2 1276 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 PRSS16Q9NQE7 514 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 DDX56Q9NY93 547 aaKnown RBP13.29□□□□□ -0.28
NEDD8-208ENST00000560427 SLCO3A1Q9UIG8 710 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 FANCMQ8IYD8 2048 aa13.29□□□□□ -0.28
NEDD8-208ENST00000560427 RCCD1A6NED2 376 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 TTC34A8MYJ7 566 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 KDELR3O43731 214 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 SIN3BO75182 1162 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 IGLV3-19P01714 112 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 SRCP12931 536 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 ACVRL1P37023 503 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 P2RY2P41231 377 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 PXNP49023 591 aaPredicted RBP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 SERINC3Q13530 473 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 DPYSL3Q14195 570 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 DLG2Q15700 870 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 TTC31Q49AM3 519 aaPredicted RBP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 INO80DQ53TQ3 878 aaPredicted RBP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 ZFYVE27Q5T4F4 411 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 C9orf64Q5T6V5 341 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 DAAM2Q86T65 1068 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 PLPP6Q8IY26 295 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 PCDH20Q8N6Y1 951 aaKnown RBP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 TPCN2Q8NHX9 752 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 UBE2Q2Q8WVN8 375 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 PTPRN2Q92932 1015 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 ISG20Q96AZ6 181 aaKnown RBP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 SIPA1Q96FS4 1042 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 HMCESQ96FZ2 354 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 CALN1Q9BXU9 219 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 TPSD1Q9BZJ3 242 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 LACRTQ9GZZ8 138 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 MKRN2Q9H000 416 aaKnown RBP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 KLC2Q9H0B6 622 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 RSPH9Q9H1X1 276 aaPredicted RBP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 USP36Q9P275 1121 aaKnown RBP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 RAPGEFL1Q9UHV5 662 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 FARP1Q9Y4F1 1045 aaPredicted RBP13.28□□□□□ -0.28
NEDD8-208ENST00000560427 ALG6Q9Y672 507 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 R4GN57 208 aa13.28□□□□□ -0.28
NEDD8-208ENST00000560427 CHD5Q8TDI0 1954 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms