RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 CXCR3P49682 368 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 ARSEP51690 589 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 EPHA5P54756 1037 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CDH6P55285 790 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 PCDH1Q08174 1060 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 C2orf54Q08AI8 447 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 DPYSL3Q14195 570 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 GRM2Q14416 872 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 KRT81Q14533 505 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 RPS6KA1Q15418 735 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 IFI16Q16666 785 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 DNTTIP2Q5QJE6 756 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 EXOSC6Q5RKV6 272 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 SNX30Q5VWJ9 437 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 PEAR1Q5VY43 1037 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 PAPD7Q5XG87 772 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 TRIM68Q6AZZ1 485 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 NPNTQ6UXI9 565 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 ARCQ7LC44 396 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 STRADAQ7RTN6 431 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 GPR149Q86SP6 731 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 DENND1CQ8IV53 801 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CCDC50Q8IVM0 306 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 RHOT1Q8IXI2 618 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 ZDHHC14Q8IZN3 488 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 SYCE1Q8N0S2 351 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 ARHGAP18Q8N392 663 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 PDZD8Q8NEN9 1154 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 ZSCAN18Q8TBC5 510 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 SH3RF2Q8TEC5 729 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 ATG4AQ8WYN0 398 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 OVCA2Q8WZ82 227 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 MRPS31Q92665 395 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 USP13Q92995 863 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 IGSF8Q969P0 613 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 ASIC4Q96FT7 647 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 SLC39A13Q96H72 371 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 ZFYVE19Q96K21 471 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 MSLNLQ96KJ4 702 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 SERPINB11Q96P15 392 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 LRRC3BQ96PB8 259 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 YIPF2Q9BWQ6 316 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 AP1M1Q9BXS5 423 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 SIK2Q9H0K1 926 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CLEC4MQ9H2X3 399 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 DHX35Q9H5Z1 703 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 WDCPQ9H6R7 721 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 PCDH18Q9HCL0 1135 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 COMMD8Q9NX08 183 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 ARHGEF38Q9NXL2 777 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CLIC5Q9NZA1 410 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 MPP6Q9NZW5 540 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 CFAP97Q9P2B7 532 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 SAE1Q9UBE0 346 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 UXTQ9UBK9 157 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 MAFFQ9ULX9 164 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 SNX12Q9UMY4 172 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 R3HDM2Q9Y2K5 976 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 MRPS23Q9Y3D9 190 aaKnown RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 NR2E1Q9Y466 385 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 JRKLQ9Y4A0 524 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 USP15Q9Y4E8 981 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 ASB3Q9Y575 518 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 HS3ST4Q9Y661 456 aa5.39□□□□□ -1.55
SPG11-220ENST00000559933 NUP210Q8TEM1 1887 aaPredicted RBP5.39□□□□□ -1.55
SPG11-220ENST00000559933 DOCK8Q8NF50 2099 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 hCG_1818297A0A087WSY0 165 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 TRAV19A0A0A6YYK7 116 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 LOC100289279A0A1B0GTE1 492 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 CCDC66A2RUB6 948 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 METTL12A8MUP2 240 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 KCNU1A8MYU2 1149 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 MFSD11O43934 449 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 CNTN5O94779 1100 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 LRIG2O94898 1065 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 ENDOD1O94919 500 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 APOEP02649 317 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 SRGAP2BP0DMP2 458 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 PECAM1P16284 738 aaPredicted RBP5.38□□□□□ -1.55
SPG11-220ENST00000559933 HDCP19113 662 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 TACR2P21452 398 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 FCARP24071 287 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 KDELR1P24390 212 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 IL4RP24394 825 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 L1CAMP32004 1257 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 ADRA1BP35368 520 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 CDKN2BP42772 138 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 TUBP50607 506 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 RWDD2BP57060 319 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 TFF2Q03403 129 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 COL19A1Q14993 1142 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 SIX1Q15475 284 aaPredicted RBP5.38□□□□□ -1.55
SPG11-220ENST00000559933 ZNF77Q15935 545 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 HADHQ16836 314 aaKnown RBP5.38□□□□□ -1.55
SPG11-220ENST00000559933 ARHGAP15Q53QZ3 475 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 ALFQ53S48 1182 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 FAM133BQ5BKY9 247 aaKnown RBP5.38□□□□□ -1.55
SPG11-220ENST00000559933 MS4A13Q5J8X5 152 aa5.38□□□□□ -1.55
SPG11-220ENST00000559933 FAM78AQ5JUQ0 283 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms