RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 OXNAD1Q96HP4 312 aaPredicted RBP12.95□□□□□ -0.34
USP3-213ENST00000559711 ZFRQ96KR1 1074 aaKnown RBP12.95□□□□□ -0.34
USP3-213ENST00000559711 TCF25Q9BQ70 676 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 EMILIN2Q9BXX0 1053 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 RBM22Q9NW64 420 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP3-213ENST00000559711 MOCS1Q9NZB8 636 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 SENP1Q9P0U3 644 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 STOML2Q9UJZ1 356 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 AAR2Q9Y312 384 aaKnown RBP12.95□□□□□ -0.34
USP3-213ENST00000559711 RWDD3Q9Y3V2 267 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 PTPRSQ13332 1948 aa12.95□□□□□ -0.34
USP3-213ENST00000559711 C2orf71A6NGG8 1288 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 H3BNC9 293 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 J3KR12 359 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 AP3B1O00203 1094 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 ANXA9O76027 345 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 CREB1P16220 341 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 PGAM1P18669 254 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 MGAT1P26572 445 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 OR1E1P30953 314 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 LSP1P33241 339 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 CA8P35219 290 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 CTNNB1P35222 781 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 RENBPP51606 427 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 CDH4P55283 916 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 UBE3AQ05086 875 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 SERINC3Q13530 473 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 RABGAP1LQ5R372 815 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 ADGRF1Q5T601 910 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 TTC19Q6DKK2 380 aaPredicted RBP12.94□□□□□ -0.34
USP3-213ENST00000559711 RFWD3Q6PCD5 774 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 RTL10Q7L3V2 364 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 LINC00523Q86TU6 105 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 CIR1Q86X95 450 aaPredicted RBP12.94□□□□□ -0.34
USP3-213ENST00000559711 TMC8Q8IU68 726 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 OR52K1Q8NGK4 314 aa12.94□□□□□ -0.34
USP3-213ENST00000559711 MTIF3Q9H2K0 278 aaKnown RBP12.94□□□□□ -0.34
USP3-213ENST00000559711 ALG13Q9NP73 1137 aaKnown RBP12.94□□□□□ -0.34
USP3-213ENST00000559711 AGO1Q9UL18 857 aaKnown RBP12.94□□□□□ -0.34
USP3-213ENST00000559711 LINC01553A4QN01 128 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 FAM159BA6NKW6 160 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 FOXO6A8MYZ6 492 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 C5orf67F2Z3F1 127 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 CLDN11O75508 207 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 C1RP00736 705 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 LRG1P02750 347 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 HLA-DQB2P05538 268 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 C8AP07357 584 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 BRAFP15056 766 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 CHN1P15882 459 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 SYN1P17600 705 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 NPY2RP49146 381 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 IL10RBQ08334 325 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 OLIG2Q13516 323 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 NAPEPLDQ6IQ20 393 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 GAREM2Q75VX8 874 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 CHST9Q7L1S5 443 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 LRRC6Q86X45 466 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 SRRM1Q8IYB3 904 aaKnown RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 MZB1Q8WU39 189 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 WBP2Q969T9 261 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 TTC17Q96AE7 1141 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 SLC22A12Q96S37 553 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 DDX50Q9BQ39 737 aaKnown RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 SELENOSQ9BQE4 189 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 MAGEH1Q9H213 219 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 ENTPD7Q9NQZ7 604 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 BFARQ9NZS9 450 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 ZNF180Q9UJW8 692 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 ZFP37Q9Y6Q3 630 aaPredicted RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 MAGEB16A2A368 324 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 HIDE1A8MVS5 230 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 GREM1O60565 184 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 PRAMEF11O60813 436 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 USP12O75317 370 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 PIAS1O75925 651 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 GLUD1P00367 558 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 MBL2P11226 248 aaPredicted RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 HDCP19113 662 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 DNAJB1P25685 340 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 GABRR2P28476 465 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 SLC18A1P54219 525 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 GEMP55040 296 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 CRADDP78560 199 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 SMAD3P84022 425 aaKnown RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 FRG1Q14331 258 aaKnown RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 MARC1Q5VT66 337 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 TXNDC8Q6A555 127 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 CASC4Q6P4E1 433 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 SLC26A11Q86WA9 606 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 CFAP52Q8N1V2 620 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 SPATA22Q8NHS9 363 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 ADAMTS19Q8TE59 1207 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 POF1BQ8WVV4 589 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 MRPS31Q92665 395 aaKnown RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 MRRFQ96E11 262 aaKnown RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 PRICKLE1Q96MT3 831 aaPredicted RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 CYP2S1Q96SQ9 504 aa12.93□□□□□ -0.34
USP3-213ENST00000559711 TRIM56Q9BRZ2 755 aaKnown RBP12.93□□□□□ -0.34
USP3-213ENST00000559711 SLC25A51Q9H1U9 297 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms