RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GIMAP2Q9UG22 337 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 BCAP29Q9UHQ4 241 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 SORCS3Q9UPU3 1222 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 C1orf232A0A0U1RR37 186 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 APBA3O96018 575 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 SULT1E1P49888 294 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 SLC12A2P55011 1212 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 PSME3P61289 254 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 CLDN10P78369 228 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 SLC12A1Q13621 1099 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 MPZL3Q6UWV2 235 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 ZNF354CQ86Y25 554 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 MARVELD2Q8N4S9 558 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 RNF34Q969K3 372 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 CSPG4P5Q96PW8 444 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 CDT1Q9H211 546 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 MRPL46Q9H2W6 279 aaKnown RBP11.54□□□□□ -0.56
LDLR-208ENST00000558518 DNAJC28Q9NX36 388 aa11.54□□□□□ -0.56
LDLR-208ENST00000558518 A0A087WZ62 844 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 PPEF2O14830 753 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 HDAC3O15379 428 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 UBA1P22314 1058 aaKnown RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 ARL2P36404 184 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 TRAF2Q12933 501 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 BNIP3Q12983 259 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 GRM3Q14832 879 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 PDK2Q15119 407 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 CARTPTQ16568 116 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 PPP1R3AQ16821 1122 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 HSDL1Q3SXM5 330 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 MGAT5BQ3V5L5 792 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 OTUD3Q5T2D3 398 aaPredicted RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 TBCBQ99426 244 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 FDXACB1Q9BRP7 624 aaPredicted RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 DPEP3Q9H4B8 488 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 PDLIM7Q9NR12 457 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 ZDHHC7Q9NXF8 308 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 XPR1Q9UBH6 696 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 WARS2Q9UGM6 360 aaKnown RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 TSR3Q9UJK0 312 aaKnown RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 VANGL2Q9ULK5 521 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 SNX10Q9Y5X0 201 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 A0A1W2PPW3 197 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 GRM2Q14416 872 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 EPGNQ6UW88 154 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 DLK2Q6UY11 383 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.53□□□□□ -0.56
LDLR-208ENST00000558518 DDI1Q8WTU0 396 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 CDHR1Q96JP9 859 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 MRPL45Q9BRJ2 306 aaKnown RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 ACAD9Q9H845 621 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 KLK14Q9P0G3 267 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 CPSF3Q9UKF6 684 aaKnown RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 TRPC5Q9UL62 973 aaPredicted RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 FNDC3AQ9Y2H6 1198 aaKnown RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 PCDHB12Q9Y5F1 795 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 AGRPO00253 132 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 TSHRP16473 764 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 PGAM1P18669 254 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 CES1P23141 567 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 PPARGP37231 505 aaPredicted RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 TPD52P55327 224 aaPredicted RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 ITGA7Q13683 1181 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 CSHL1Q14406 222 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 CAPRIN1Q14444 709 aaKnown RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 POTEHQ6S545 545 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 KCNMB4Q86W47 210 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 NT5DC4Q86YG4 428 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 GABPB2Q8TAK5 448 aaPredicted RBP11.53□□□□□ -0.56
LDLR-208ENST00000558518 MCRS1Q96EZ8 462 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 VPS39Q96JC1 886 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 SIK2Q9H0K1 926 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 PNPLA8Q9NP80 782 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 CNTN6Q9UQ52 1028 aa11.53□□□□□ -0.56
LDLR-208ENST00000558518 A0A0A0MRY4 1105 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 NOL3O60936 208 aaKnown RBP11.52□□□□□ -0.56
LDLR-208ENST00000558518 CILPO75339 1184 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 SLC4A1P02730 911 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 VDRP11473 427 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 TMEM132DQ14C87 1099 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 ADGRG6Q86SQ4 1221 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 DENND6AQ8IWF6 608 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 DCPSQ96C86 337 aaKnown RBP11.52□□□□□ -0.56
LDLR-208ENST00000558518 ELMO2Q96JJ3 720 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 SPATA13Q96N96 652 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 SEPHS2Q99611 448 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 TRNAU1APQ9NX07 287 aaKnown RBP11.52□□□□□ -0.56
LDLR-208ENST00000558518 RAB26Q9ULW5 256 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 COPG1Q9Y678 874 aaKnown RBP11.52□□□□□ -0.56
LDLR-208ENST00000558518 CEPT1Q9Y6K0 416 aa11.52□□□□□ -0.56
LDLR-208ENST00000558518 CNTNAP1P78357 1384 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 PSMD12O00232 456 aaPredicted RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 KCNH1O95259 989 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 PENKP01210 267 aaPredicted RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 ACAT1P24752 427 aaKnown RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 L1CAMP32004 1257 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 SLC7A2P52569 658 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 GNA12Q03113 381 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 ITGADQ13349 1161 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 RPS6KA2Q15349 733 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms