RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 DGLUCYQ7Z3D6 616 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 TMC6Q7Z403 805 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 IRF2BP2Q7Z5L9 587 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 ZNF354CQ86Y25 554 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 PSTKQ8IV42 348 aaKnown RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 CNGA4Q8IV77 575 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 SFTPA1Q8IWL2 248 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 HDDC3Q8N4P3 179 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 DCLK2Q8N568 766 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 ATP11CQ8NB49 1132 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 FNIP1Q8TF40 1166 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 CASKIN2Q8WXE0 1202 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 BAP1Q92560 729 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 ZNF653Q96CK0 615 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 TOE1Q96GM8 510 aaKnown RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 FEM1AQ9BSK4 669 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 RSPH9Q9H1X1 276 aaPredicted RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 MAGEH1Q9H213 219 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 ZDHHC4Q9NPG8 344 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 CNOT8Q9UFF9 292 aaKnown RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 CLEC4EQ9ULY5 219 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 SLC6A14Q9UN76 642 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 INVSQ9Y283 1065 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 IGLV3-10A0A075B6K4 115 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 TMCO5BA8MYB1 307 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 DCLK1O15075 740 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 MAGEC1O60732 1142 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 RAMP2O60895 175 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 PRNPP04156 253 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 PLEKP08567 350 aaPredicted RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 CDC25BP30305 580 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 RFC1P35251 1148 aaPredicted RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 SGSHP51688 502 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 YBEYP58557 167 aaPredicted RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 PIGHQ14442 188 aaPredicted RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 PTPRNQ16849 979 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 RSPO4Q2I0M5 234 aaPredicted RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 CCDC14Q49A88 953 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 TRIM61Q5EBN2 209 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 KIAA1211LQ6NV74 962 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 WDR59Q6PJI9 974 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 TMEFF1Q8IYR6 380 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 EMC1Q8N766 993 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 OR8K1Q8NGG5 319 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 RLN3Q8WXF3 142 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 SORCS1Q8WY21 1168 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 CENPIQ92674 756 aaPredicted RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 HSPA12BQ96MM6 686 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 PCDHB18PQ96TA0 734 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 SPON2Q9BUD6 331 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 CEP44Q9C0F1 390 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 PABPC3Q9H361 631 aaKnown RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 SLC32A1Q9H598 525 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 ATP13A1Q9HD20 1204 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 TMEM9BQ9NQ34 198 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 PRSS16Q9NQE7 514 aa8.88□□□□□ -0.99
USP3-208ENST00000558285 ARGLU1Q9NWB6 273 aaPredicted RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 XPO7Q9UIA9 1087 aaKnown RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 RIF1Q5UIP0 2472 aaKnown RBP8.88□□□□□ -0.99
USP3-208ENST00000558285 A0A1B0GTW7 788 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 ERICH4A6NGS2 130 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 WASH3PC4AMC7 463 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 SLC30A4O14863 429 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 ATP9BO43861 1147 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 IPO7O95373 1038 aaKnown RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 SLU7O95391 586 aaKnown RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 SEMA4FO95754 770 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 IL1BP01584 269 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 IVLP07476 585 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 SERPINF2P08697 491 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 HLA-EP13747 358 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 H2AFXP16104 143 aaPredicted RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 RRM1P23921 792 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 TPI1P60174 286 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 RPS14P62263 151 aaKnown RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 PITX1P78337 314 aaPredicted RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 GNA12Q03113 381 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 CST6Q15828 149 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 HADHQ16836 314 aaKnown RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 INAVAQ3KP66 663 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 PARP15Q460N3 678 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 C2CD6Q53TS8 623 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 PLA2G2CQ5R387 149 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 TMEM215Q68D42 235 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 PLEKHA7Q6IQ23 1121 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 CCDC91Q7Z6B0 441 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 CPLX3Q8WVH0 158 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 CTNNBL1Q8WYA6 563 aaPredicted RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 IGSF8Q969P0 613 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 ARHGEF26Q96DR7 871 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 ZNF419Q96HQ0 510 aaPredicted RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 LRIG1Q96JA1 1093 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 TACO1Q9BSH4 297 aaKnown RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 EDEM2Q9BV94 578 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 GPR174Q9BXC1 333 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 MKRN2Q9H000 416 aaKnown RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 ZWILCHQ9H900 591 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 POLR3BQ9NW08 1133 aaPredicted RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms